Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03755 ATGACTGTGGATGAAGTGGGTAGTAGCTCTGAGTGGAGCAGAGACCAGGATAAAGCATTTGAAAATGCCGTGGCACGTCATCCTGAGGATGCTTCAGATCGATGGGAGAAGATTGCGGCTGATGTGCCAGGAAAAACTTTAGAAGAGATTAAACATCATTACGAGCTGTTGCTTGATGATATTAACCGGATTGAATCTGGTTGTGTGCCCCTACCATCTTATAATTCTTCTTCAGATGGCTCAACAAGCTATGCTAATGATGAAGGAACTGGCAAGAAGGGAGGCCATCCTTGGAATTATAATAGTGAGTCTAACCATGGAAATAAGGCTTCAAGATCTGATCAGGAACGAAGAAAGGGTGTTGCTTGGACAGAGGATGAGCACAGGTTATTTCTTCTTGGCTTGGAAAAGTATGGAAAAGGTGACTGGCGAAGTATATCAAGAAACTTTGTGGTGTCAAGAACACCAACACAAGTAGCAAGCCATGCCCAAAAATACTTCATTCGTTTGAACTCAATGAATAAGGATAGAAGGCGATCCAGCATACATGATATCACGAATGTGAACAATGGAGACACTTCAGCACCTCAAGGACCAATTACTGGTCAAACAAATGAGTCTGCAGCAAATTCTGCTGGAAAATCAGCCAAACAAGCCCCTCCAACTCCAACTGGGCCCCCAAGTGTAGGAATATATGCTGCTCCTACCATTGGGCAACCTATTGGAGGACCCCTTGTATCTGCCGTTGGCACCCCAGTGAATCTTCCCCCTCCACACATGGCATATGGTCTGGGAGCCCCAGTTCCTGGGGCAGTTGTTCCTGGGGCACCAATGAACTTGGGTCCTGTGCCATACCCCATGCCACATACATCTGCTCATAGGTGA 885 0.4621 MTVDEVGSSSEWSRDQDKAFENAVARHPEDASDRWEKIAADVPGKTLEEIKHHYELLLDDINRIESGCVPLPSYNSSSDGSTSYANDEGTGKKGGHPWNYNSESNHGNKASRSDQERRKGVAWTEDEHRLFLLGLEKYGKGDWRSISRNFVVSRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDITNVNNGDTSAPQGPITGQTNESAANSAGKSAKQAPPTPTGPPSVGIYAAPTIGQPIGGPLVSAVGTPVNLPPPHMAYGLGAPVPGAVVPGAPMNLGPVPYPMPHTSAHR. 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03755 294 FunFam transcription factor MYB1R1 121 172 - -
Seca12g03755 294 CDD SANT 11 58 IPR001005 -
Seca12g03755 294 Gene3D - 121 173 - -
Seca12g03755 294 SUPERFAMILY Homeodomain-like 10 66 IPR009057 -
Seca12g03755 294 CDD SANT 122 167 IPR001005 -
Seca12g03755 294 Gene3D - 4 71 - -
Seca12g03755 294 ProSiteProfiles SANT domain profile. 123 171 IPR017884 -
Seca12g03755 294 SMART sant 8 60 IPR001005 -
Seca12g03755 294 SMART sant 119 169 IPR001005 -
Seca12g03755 294 NCBIfam myb-like DNA-binding domain, SHAQKYF class 119 169 IPR006447 GO:0003677
Seca12g03755 294 SUPERFAMILY Homeodomain-like 117 172 IPR009057 -
Seca12g03755 294 MobiDBLite consensus disorder prediction 10 36 - -
Seca12g03755 294 MobiDBLite consensus disorder prediction 74 88 - -
Seca12g03755 294 FunFam Transcription factor SRM1 4 71 - -
Seca12g03755 294 MobiDBLite consensus disorder prediction 1 36 - -
Seca12g03755 294 MobiDBLite consensus disorder prediction 177 231 - -
Seca12g03755 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 115 171 IPR017930 -
Seca12g03755 294 MobiDBLite consensus disorder prediction 74 121 - -
Seca12g03755 294 ProSiteProfiles SANT domain profile. 7 62 IPR017884 -
Seca12g03755 294 PANTHER TRANSCRIPTION FACTOR KUA1 8 290 - -
Seca12g03755 294 Pfam Myb-like DNA-binding domain 10 55 IPR001005 -
Seca12g03755 294 Pfam Myb-like DNA-binding domain 122 167 IPR001005 -
Seca12g03755 294 MobiDBLite consensus disorder prediction 184 218 - -
Seca12g03755 294 ProSiteProfiles Myb-like domain profile. 10 58 IPR001005 -
Seca12g03755 294 ProSiteProfiles Myb-like domain profile. 115 167 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03755 Seca-Chr12 96509210 96518605 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca12g03755 Myb_DNA-binding 2.1e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03755 - - gmx:100820272 507.294