Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03749 ATGAAAACACATTCACAAGAGAACTATCATATCTGCCCATACCCAGATTGCAGAAAGAGATATGCCCACGAATACAAGCTGAAGAATCACGTTGCATCTCATCATGAAAAGGTTGGTTTCATCCTTATCTTACAAAATGCATCAGTTGAGGTGATCAAGTACACTCCACCTTTAGAGAAGCAAACAAAAACTACTAAACCTTCTGGAGGGGCATATGGTTCTGCATCATCTGATCACCCCTATGCATGTCCTTATGAACAGACTGTAATCGATTACAGGGTTTTCTGGGCAGCGTTGAGTGAGTTTGGCTTGCTGGTAATCGATTACAGGGGGCTTGTGATCGATTACCAGAGAGTTGACATGCTGGTAATCGATTACAGGAGGCTTGTAATCGATTACCAGAGTGTATTTTGTGTTCCAGAGTTGCTGGTGACGAATATGGCACTCAAGGTGCCGAGTATTGAATTGAAGGGGTTCCGCTCTGATACAGATTGGGGTATAAGGGTGTCACATTACATCCATGAATACAAGCTTAAACTCCATTTGAAGAGGGAGCATCCGGGGCATATGCCTGATGAAAATACCGAGCATGCTCAGGTTAATGCTGACAATGAAAAGGATGAAGCAAGTGACCAAGATGTCTACGGTGGGAAATGGTCAAGTGATAAAACCTTTGATGAAGAAGATAGCGAAGAAACAGAAGAAGACGATCGAAATAATGTTGAAGATGGTTGGAGATATGCAGGAGGAAACAATGAAGATGGCGATGAAGAAAACAAAATATGA 786 0.4224 MKTHSQENYHICPYPDCRKRYAHEYKLKNHVASHHEKVGFILILQNASVEVIKYTPPLEKQTKTTKPSGGAYGSASSDHPYACPYEQTVIDYRVFWAALSEFGLLVIDYRGLVIDYQRVDMLVIDYRRLVIDYQSVFCVPELLVTNMALKVPSIELKGFRSDTDWGIRVSHYIHEYKLKLHLKREHPGHMPDENTEHAQVNADNEKDEASDQDVYGGKWSSDKTFDEEDSEETEEDDRNNVEDGWRYAGGNNEDGDEENKI. 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03749 261 MobiDBLite consensus disorder prediction 239 261 - -
Seca12g03749 261 Gene3D Classic Zinc Finger 7 38 - -
Seca12g03749 261 PANTHER TRANSCRIPTIONAL REPRESSOR PROTEIN YY 1 240 - -
Seca12g03749 261 FunFam zinc finger transcription factor YY1 7 38 - -
Seca12g03749 261 SUPERFAMILY beta-beta-alpha zinc fingers 1 35 IPR036236 -
Seca12g03749 261 MobiDBLite consensus disorder prediction 186 261 - -
Seca12g03749 261 MobiDBLite consensus disorder prediction 186 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03749 Seca-Chr12 96435406 96439053 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03749 1 86 C2H2 Transcription Factor Family AT4G06634 62.791 1.13e-25 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca12g03749 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03749 - - hbr:110650382 150.214