Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03748 ATGGACGTTGCTGATTCGAACCATCCCTACGATCCACTTCCGCAGAACGTTGCAGCATCAGAGCATCACAACACATCGCAACATGGATCCGAAACCCTAAATTCCGGTGGTCAAAACGCGAACGGTATTAACGGAAACCCATCGGAGAACGGCCAGGGCGTTACCAATACCGATTCGCATCCTCAGATTGCGAAACCCTTGATCTCAGAGAATGGTTTTACCGGTAATACCCGCAGTGGCACCACCGACAAGGATCAATCTGGCGGCGAGGAGGAGACTACCAGCAAGCGCCGTCGCCGAAGCCGGTGGGACCCGCAGCCCGATTCCAACGACCAGAGCGGTGGCGAAGGTGCCGGAACGAAGAAGAGGAAGTCTCGTTGGGCCGACGATGAGCCAAAGCCGGTGATTCAGCTTCCTGATTTCATGGGCGGTATTGAATTCGATCCAGAGATTCAAGCTTTGAATAGTAGGCTTCTTGAGATTAGTAGAATGTTACAATCAGGTTTGCCTTTAGATGATCGCCCTGAAGGTGCACGATCTCCTTCGCCTGAACCTATATATGACAATATGGGCATTAGGATTAACACTAGAGAGTATCGTGCGCGTGAGAGATTGCAAAAAGAGAGGCAAGAAATTATATCTCAGATTATAAAGAAAAATCCCGCATTTAAGCCACCTGCAGATTATAGGCCGCCAAAGCTTCAGAAGAAGCTTTATATACCGATGAAAGAATACCCTGGTTACAATTTCATAGGGCTTATTATTGGTCCTAGAGGTAACACCCAGAAGCGGATGGAGAAAGAAACGGGCGCTAAAATTGTGATTCGAGGTAAAGGGTCGGTGAAAGAAGGCAGGCTGCAACAGAAGAGGGATTTGAAACCTGACCCTTCAGAGAATGAAGATTTGCATGTTTTGGTAGAGGCAGAGACGCAGGAGTCTCTTGATGCTGCTGCAGGAATGGTGGAGAAGCTCTTGCAACCTGTGGATGAGGTATTGAATGAGCATAAGAGGCAACAGCTTAGGGAACTTGCGGCCTTGAATGGGACCATTAGGGACGAAGAGTATTGCCGGTTGTGTGGTGAACCTGGTCATCGCCAATATGCATGCCCTACAAGGACTTCAACGTTTAAGAGTGAAGTTGTCTGTAAGCATTGTGGGGATGGTGGTCATCCAAGCATAGATTGTCCGGTGAAGGGTGCTACTGGGAAGAAGATGGATGATGAGTATCAGAACTTCCTAGCAGAGCTGGGAGGTACAGTTCCTGAGTCTGCAACAAAGCAAACCAGTACATTGGCAATTGGTTCAGGCAATTCCGGAAGCAATCCTCCTTGGGCTAACAATTCTGGTTCTACTGGTGGGGCACCACAAGCTGGCTTAGGGGCTGCTGCAGCTAAAAAGGAAATTGATGATACAAATTTGTACATTGGGTATTTGCCACCCACTCTTGATGATGATGGCCTGATCCAATTGTTTCAACAATTTGGCGAGATTGTTATGGCAAAAGTTATCAAGGATAGAATGTCTGGTTTAAGTAAAGGATACGGGTTTGTGAAGTATGCTGATGTCACAATGGCAAACAATGCAATCTTAGCCATGAATGGTTATCTCCTTGAGGGTCGAACTATTGCAGTCAGAGTTGCTGGTAAGCCTCCTCAGCCTGTTGTACCTCCTGGCCCACCAGCTTCTGCTGTGCCCACTTATCCTGTTCCAAGCCAGCCACTTGGTGCCTATCCATCCCAACAATATGCTGCCGGTGGTCCTCTTGCAAGTGCTCCCCCTGGGAGTTATGGTGCTACACCAGTCCCATGGGGACCTCCTGTTCCTCCTCCATATGCACCTTATGCTCCTCCTCCACCTGGTTCAACTATGTATCCTCCTATGCAAGGTCAACCTATGCCTCCTTATGGAGTTCAATATCCTCCCGTCCAGACAGGCCCCCCTGGTGCCCCGTCCCAGCCTGCGACTTCTAGTGAAGCGCAGCAGAGTTACCCTCCTGGAGTGCAGTCTGACAATAGTACCTCTTCTCAGTCTGTACCAGCCAATATATATGGGAGCACAATACCTTCAATGCCACCGGCAGCTCAGCCTACATACCCTGCATCCTATGGATATCCGCCTTACTACAATGCAGTACCTCCACCACCTCCCCCTCCTGCCCCGGTCCCTGTCTCTTCAGACCAATCGCACAGTGTTGTAAATGCACCTTGGGCCAATAATCCTCTGGTTCCACCTCCCCCACCATCTGCAGAGAAGACAACGTATGGTGCTGATCAATCCCAGAGCATTGGAAATGTGCCTTGGGCAGCAAATCCACCACTGCCTCCTCCTGCTTCATCAGCTGAGAAGACATCACATGGAGCTGATTCAGAGTATGAGAAGTTCATGGCAGAGATGAAATGA 2400 0.4938 MDVADSNHPYDPLPQNVAASEHHNTSQHGSETLNSGGQNANGINGNPSENGQGVTNTDSHPQIAKPLISENGFTGNTRSGTTDKDQSGGEEETTSKRRRRSRWDPQPDSNDQSGGEGAGTKKRKSRWADDEPKPVIQLPDFMGGIEFDPEIQALNSRLLEISRMLQSGLPLDDRPEGARSPSPEPIYDNMGIRINTREYRARERLQKERQEIISQIIKKNPAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEAETQESLDAAAGMVEKLLQPVDEVLNEHKRQQLRELAALNGTIRDEEYCRLCGEPGHRQYACPTRTSTFKSEVVCKHCGDGGHPSIDCPVKGATGKKMDDEYQNFLAELGGTVPESATKQTSTLAIGSGNSGSNPPWANNSGSTGGAPQAGLGAAAAKKEIDDTNLYIGYLPPTLDDDGLIQLFQQFGEIVMAKVIKDRMSGLSKGYGFVKYADVTMANNAILAMNGYLLEGRTIAVRVAGKPPQPVVPPGPPASAVPTYPVPSQPLGAYPSQQYAAGGPLASAPPGSYGATPVPWGPPVPPPYAPYAPPPPGSTMYPPMQGQPMPPYGVQYPPVQTGPPGAPSQPATSSEAQQSYPPGVQSDNSTSSQSVPANIYGSTIPSMPPAAQPTYPASYGYPPYYNAVPPPPPPPAPVPVSSDQSHSVVNAPWANNPLVPPPPPSAEKTTYGADQSQSIGNVPWAANPPLPPPASSAEKTSHGADSEYEKFMAEMK. 800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03748 799 MobiDBLite consensus disorder prediction 424 458 - -
Seca12g03748 799 MobiDBLite consensus disorder prediction 718 799 - -
Seca12g03748 799 Pfam Splicing factor 1 helix-hairpin domain 123 230 IPR032570 -
Seca12g03748 799 SMART c2hcfinal6 381 397 IPR001878 GO:0003676|GO:0008270
Seca12g03748 799 SMART c2hcfinal6 355 371 IPR001878 GO:0003676|GO:0008270
Seca12g03748 799 SUPERFAMILY Retrovirus zinc finger-like domains 352 398 IPR036875 GO:0003676|GO:0008270
Seca12g03748 799 Gene3D - 148 226 IPR047086 -
Seca12g03748 799 Gene3D - 437 553 IPR012677 -
Seca12g03748 799 SMART kh_6 234 326 IPR004087 GO:0003676
Seca12g03748 799 MobiDBLite consensus disorder prediction 117 133 - -
Seca12g03748 799 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 473 542 IPR000504 GO:0003723
Seca12g03748 799 MobiDBLite consensus disorder prediction 18 83 - -
Seca12g03748 799 MobiDBLite consensus disorder prediction 622 680 - -
Seca12g03748 799 ProSiteProfiles Zinc finger CCHC-type profile. 356 370 IPR001878 GO:0003676|GO:0008270
Seca12g03748 799 MobiDBLite consensus disorder prediction 84 106 - -
Seca12g03748 799 ProSiteProfiles Type-1 KH domain profile. 249 321 - -
Seca12g03748 799 FunFam splicing factor-like protein 1 226 354 - -
Seca12g03748 799 MobiDBLite consensus disorder prediction 424 454 - -
Seca12g03748 799 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 234 360 IPR036612 GO:0003723
Seca12g03748 799 CDD KH-I_BBP 233 326 - -
Seca12g03748 799 MobiDBLite consensus disorder prediction 170 189 - -
Seca12g03748 799 MobiDBLite consensus disorder prediction 785 799 - -
Seca12g03748 799 ProSiteProfiles Zinc finger CCHC-type profile. 382 396 IPR001878 GO:0003676|GO:0008270
Seca12g03748 799 PANTHER RNA-BINDING PROTEIN RELATED 85 592 IPR045071 -
Seca12g03748 799 MobiDBLite consensus disorder prediction 1 135 - -
Seca12g03748 799 MobiDBLite consensus disorder prediction 279 299 - -
Seca12g03748 799 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 471 549 IPR000504 GO:0003723
Seca12g03748 799 FunFam splicing factor-like protein 1 451 553 - -
Seca12g03748 799 MobiDBLite consensus disorder prediction 622 648 - -
Seca12g03748 799 Gene3D - 354 407 - -
Seca12g03748 799 FunFam splicing factor 1 354 407 - -
Seca12g03748 799 SMART rrm1_1 472 545 IPR000504 GO:0003723
Seca12g03748 799 Pfam KH domain 249 297 IPR004088 GO:0003723
Seca12g03748 799 MobiDBLite consensus disorder prediction 752 766 - -
Seca12g03748 799 SUPERFAMILY RNA-binding domain, RBD 466 559 IPR035979 GO:0003676
Seca12g03748 799 MobiDBLite consensus disorder prediction 649 680 - -
Seca12g03748 799 Gene3D K Homology domain, type 1 231 353 IPR036612 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03748 Seca-Chr12 96414401 96419882 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03748 471 662 Eukaryotic Initiation Factors Gene Family AT3G16380 27.317 4.36e-13 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03748 K13095 - gmx:100800982 1173.3