Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03736 ATGTATTGGGTTCACCCTCAAATCTGCCATAGCAGTGATGCAATCAACAGCCTCACTGTTATTTCCCCATCTTCTTCTTCTTCTTCCGCATCATTGCCTTATGGTGGTTCTGACTACAAGAAACAATTAGCGCCACCTCTAGCTTCTTCATCTGGCAATAGAATGAGCCCTGCAGTTGTTTTCATCATAGTCATTTTAGCTATTGTATTTTTCATCTCTGGTATCCTTCAATTGCTTGTTAGATTTCTCATCAAGCAGAGGTCCTCTTCATCAATTTCTCAATCCAATAGGTTCCCTGACATGTCTGAATCTGATCCTTACCAGAGACAGTTACAGCAGCTCTTCCATCTTCATGATTCAGGCCTAGATCAGGCTTTCATAGATGCTCTCCCAGTTTTCTTTTATGAAGAGATAATAGGTTTAAAAGAGCCTTTTGATTGTGCTGTTTGCCTTTGCCAATTCTCAGAACAAGACATGCTCAGATTGTTGCCCATTTGTAATCATGCTTTTCACATTGATTGCATAGACACATGGCTTCTGTCTAATTCAACTTGTCCTCTCTGTAGAAGGAGTCTTTATGAACCAGGCTTTGCCTTTGAAAACCCAGTTTATGACTTTGAGGGTCTAAGGGATGAAGATGGGGTTTCAGGCAGTGTTGCTGGTGATGCTGCTTCTATTAACAAACATGCAGAGAATCACATAATGAGTGGTAAAAGGGTGTTTTCTGTCAGGCTTGGAAAATTTAGAAGCTCAAATAATGGAGAGGGGGTGGAAAGAGGTGAAGGAGAGAGCAGTACAAGTATTGTAGATGTTAGAAGATGCTATTCAATGGGGTCTTTCCAGTATGTGGTTGCTGATTCAGATTTGCAAGTGGCTTTATGCCCCAATAGAGGTGATGGAGCAGGTAGTACCAGTGGCAGTATGAGACAATTGAAAGGGAGATTAGTCCAATATGATAATTCTTCCACTGAAGGTGATGTTGAGGGAAAGAAAGTCAACATTGCTAGGAAAGGTGAAAGCTTTTCTGTTTCCAAGATCTGGCTATGGTCTAGGAAGGATAAGGTATCAAATAATTCACTAGAACCCCGATTGGGTAATTCTAATGTCACTGCAACTTTGCCATAG 1125 0.4107 MYWVHPQICHSSDAINSLTVISPSSSSSSASLPYGGSDYKKQLAPPLASSSGNRMSPAVVFIIVILAIVFFISGILQLLVRFLIKQRSSSSISQSNRFPDMSESDPYQRQLQQLFHLHDSGLDQAFIDALPVFFYEEIIGLKEPFDCAVCLCQFSEQDMLRLLPICNHAFHIDCIDTWLLSNSTCPLCRRSLYEPGFAFENPVYDFEGLRDEDGVSGSVAGDAASINKHAENHIMSGKRVFSVRLGKFRSSNNGEGVERGEGESSTSIVDVRRCYSMGSFQYVVADSDLQVALCPNRGDGAGSTSGSMRQLKGRLVQYDNSSTEGDVEGKKVNIARKGESFSVSKIWLWSRKDKVSNNSLEPRLGNSNVTATLP. 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03736 374 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 50 347 - -
Seca12g03736 374 FunFam RING-H2 finger protein ATL46 109 194 - -
Seca12g03736 374 ProSiteProfiles Zinc finger RING-type profile. 147 189 IPR001841 -
Seca12g03736 374 SMART ring_2 147 188 IPR001841 -
Seca12g03736 374 SUPERFAMILY RING/U-box 126 195 - -
Seca12g03736 374 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 108 194 IPR013083 -
Seca12g03736 374 Pfam Ring finger domain 146 189 IPR001841 -
Seca12g03736 374 CDD RING-H2_EL5-like 146 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03736 Seca-Chr12 95988135 95989259 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03736 74 354 C3H Transcription Factor Family AT2G18650 38.710 1.53e-53 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03736 - - gmx:100818135 552.747