Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03732 ATGGCATCAAGATCATATGCTAATCTCTTAGACTTAGCTGGTGGAGACTTGCTTGAAATACCTCACACCCCAAGAACTCTTCCAAGGATTATGACTGTTCCTGGAATTATTTCTGACCTGGATGGTTATGGTTGTAATGATGGAGAGTCAGATGTTAGCTCTTCTGGGTGTCGAGAACGGAAAATCATTGTGGCAAACATGCTGCCACTGCAGGCTAAAAAAGATACGGAATCTGCTAAATGGTGCTTCAGTTGGGATGAGGATTCAATTTTATTACAATTGAAAGATGCTTTTTCTTCTGATATTGAGGTAATCTATGTGGGTTCCCTCAAGGTTGAAATAGATGCTAGTGAGCAGGAAGAAGTTGCTCAGAGATTACTGGATGACTTTAATTGTGTACCCACCTTTCTACCCCATGATCTGCAGAAGAAGTTCTATCTTGGCTTTTGTAAACAGCAGCTTTGGCCTCTCTTCCATTATATGCTACCTATATGCCCAGATCATGGTGATCGCTTTGATCGCTTGCTTTGGCAGGCTTATGTTTCTGCAAACAAAATATTTGCAGACAAGGTTATGGAAGTAATTAATCCTGATGATGATTTTGTTTGGGTTCATGACTATCACTTGATGGTTTTGCCTACCTTCTTGAGGAAACGGTTTAATCGAGTTAAGCTTGGGTTCTTTCTTCACAGTCCTTTCCCATCATCTGAAATTTACCGAACTTTGCCAGTAAGGGATGAAATATTGAGGGGATTGTTAAATTCCGATTTAATTGGTTTTCATACATTTGATTATGCTCGCCACTTTCTTTCTTGCTGCAGTAGGATGCTAGGTCTGGACTACGAATCTAAGCGAGGACATATAGGACTTGATTACTTTGGCCGCACTATATTTATTAAAATTTTGCCTGTAGGCATTCACATGGGTAGGCTTCAATCTGTATTAAATCTTCCTTCTACATCTGCTAAACTAAAAGAGGTTCAGGAAGAGTTTAAGGGTAGGAAAGTAATTCTTGGTGTTGACGACATGGACATTTTTAAGGGCATCAGTCTGAAACTTCTAGCTGTGGAGCATTTGCTACAGCAGAATCCGGATTTGCAGGGAAAAGTTGTCCTAGTTCAAATTGTAAATCCTGCTAGGGGTTCAGGGAAGGATGTTCAGGAAGCAAAAAAGGAAACATATTTAATTGCTCAGAGGATCAATGATACTTATGGATCAAATCATTACCAACCAGTCATTCTTATTGACCGCCCTGTTCCTCGTTTTGAGAAGAGTGCCTATTATGCTGTAGCTGAATGTTGCATTGTCAATGCCGTAAGGGATGGGATGAACTTAGTTCCATACAAATATATTGTCTGCAGACAGGGAACTGCACAATTGGATGAAGCATTGGATAGAAAAAGTGATTCTCCTCGAACAAGCATGCTTGTTGTGTCTGAGTTCATTGGTTGTTCACCTTCTTTGAGTGGGGCCATCAGGGTCAATCCCTGGGATATAGATGCAGTTGCTGATGCTCTTAATTTGGCCATTACTATGAGTGATTCAGAGAAGCAGTTGCGCCATGAGAAACATTATCGGTATGTCAGTTCTCATGATGTGGCATATTGGGCAAAAAGCTTTATGCAGGATTTGGAGAGAGCCTGCAAAGATCATTACACCAAAAGGTGCTGGGGAATTGGTTTGGGCCTAGGATTTAGAGTTGTTTCTCTTTCTCATGGATTTAGGAAGTTGTCCATTGACCATATTGTTTCAGCATACAAAAGAACCAGTAGAAGGGCCATATTTCTTGATTATGATGGTACTGTTGTACCACAATCTTCTTTAAATAGAATCCCCAGCCCTGAGGTCACATCTGTGCTAAATGCTCTGTGCAATGATCCCAAGAATATTGTGTTCATTGTTAGTGGGAGGGGAAGAGATTCTCTGAGTGATTGGTTTTCTTCATGCAAAAAGCTGGGACTCGCAGCTGAACATGGGTACTTTTTAAGGTGGGATAGTGATTCTAAATGGGAAACCAGTCACTTATCTGCAGACCTGGATTGGAAAAATATAGTAGAACCTGTCATGCAGTTGTATATGGAAACAACTGATGGATCTACTATTGAAGTTAAGGAAAGTGCTTTGGTGTGGCATCATCAAGATGCAGACCCTGATTTTGGTTCTTGCCAAGCCAAAGAATTGCTGGATCACTTGGAAAGTGTTCTTGCTAATGAACCTGCAATTGTTAAGAGAGGCCAGCATATTGTTGAAGTTAAGCCACAGGGAGTAAGCAAGGGTTTGGTAGCTGAAAAGGTTCTTTTGACAATGGTTAATGGAGGTAATCCACCGGATTTTGTAATGTGTGTTGGAGATGATAGGTCTGACGAAGACATGTTTGAGAGCATTTTGAGGACAGTCTCATGCCCATCATTACCATCAGCTCCAGAAATCTTTGCCTGCACTGTAGGTAGGAAGCCTAGCAAGGCCAAGTATTTTCTTGATGATGCTGCTGATGTTGTAAAGATGCTTCAGGGCCTTGCAGCTTCATCAAATCCCAAGCCCAGGCATCTTGCCCAATTCCAGGTTTCTTTTGAAAGCACAGTTTGA 2586 0.4122 MASRSYANLLDLAGGDLLEIPHTPRTLPRIMTVPGIISDLDGYGCNDGESDVSSSGCRERKIIVANMLPLQAKKDTESAKWCFSWDEDSILLQLKDAFSSDIEVIYVGSLKVEIDASEQEEVAQRLLDDFNCVPTFLPHDLQKKFYLGFCKQQLWPLFHYMLPICPDHGDRFDRLLWQAYVSANKIFADKVMEVINPDDDFVWVHDYHLMVLPTFLRKRFNRVKLGFFLHSPFPSSEIYRTLPVRDEILRGLLNSDLIGFHTFDYARHFLSCCSRMLGLDYESKRGHIGLDYFGRTIFIKILPVGIHMGRLQSVLNLPSTSAKLKEVQEEFKGRKVILGVDDMDIFKGISLKLLAVEHLLQQNPDLQGKVVLVQIVNPARGSGKDVQEAKKETYLIAQRINDTYGSNHYQPVILIDRPVPRFEKSAYYAVAECCIVNAVRDGMNLVPYKYIVCRQGTAQLDEALDRKSDSPRTSMLVVSEFIGCSPSLSGAIRVNPWDIDAVADALNLAITMSDSEKQLRHEKHYRYVSSHDVAYWAKSFMQDLERACKDHYTKRCWGIGLGLGFRVVSLSHGFRKLSIDHIVSAYKRTSRRAIFLDYDGTVVPQSSLNRIPSPEVTSVLNALCNDPKNIVFIVSGRGRDSLSDWFSSCKKLGLAAEHGYFLRWDSDSKWETSHLSADLDWKNIVEPVMQLYMETTDGSTIEVKESALVWHHQDADPDFGSCQAKELLDHLESVLANEPAIVKRGQHIVEVKPQGVSKGLVAEKVLLTMVNGGNPPDFVMCVGDDRSDEDMFESILRTVSCPSLPSAPEIFACTVGRKPSKAKYFLDDAADVVKMLQGLAASSNPKPRHLAQFQVSFESTV. 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03732 861 CDD GT20_TPS 60 545 IPR001830 GO:0003824|GO:0005992
Seca12g03732 861 Gene3D - 591 713 IPR023214 -
Seca12g03732 861 Gene3D - 721 851 IPR023214 -
Seca12g03732 861 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 591 708 - -
Seca12g03732 861 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 60 549 - -
Seca12g03732 861 NCBIfam HAD-IIB family hydrolase 593 794 IPR006379 -
Seca12g03732 861 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 721 852 - -
Seca12g03732 861 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 53 312 - -
Seca12g03732 861 NCBIfam trehalose-phosphatase 590 839 IPR003337 GO:0003824|GO:0005992
Seca12g03732 861 Pfam Glycosyltransferase family 20 60 545 IPR001830 GO:0003824|GO:0005992
Seca12g03732 861 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 29 840 IPR001830 GO:0003824|GO:0005992
Seca12g03732 861 Pfam Trehalose-phosphatase 595 828 IPR003337 GO:0003824|GO:0005992
Seca12g03732 861 FunFam Alpha,alpha-trehalose-phosphate synthase 314 529 - -
Seca12g03732 861 Gene3D Glycogen Phosphorylase B; 313 529 - -
Seca12g03732 861 CDD HAD_TPP 593 834 - -
Seca12g03732 861 Gene3D Glycogen Phosphorylase B; 54 312 - -
Seca12g03732 861 SUPERFAMILY HAD-like 592 840 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03732 Seca-Chr12 95786373 95792323 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03732 1 861 Trehalose Biosynthesis Gene Families AT1G23870 75.922 0.0 1389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03732 K16055 - gmx:100775779 1617.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g03732 12 95786373 95792323 Seca4g03110 4 53378199 53383413 ECH
Seca12g03732 12 95786373 95792323 Seca12g03732 12 95786373 95792323 ECH
Seca10g01503 10 16257452 16262258 Seca12g03732 12 95786373 95792323 PCT