Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03719 ATGTCTCGAATTTATGTTGGAAATTTGGACCCTCGAGTCACTGAAAGGGATCTCGAAGATGAATTTCGTTTGTACGGTGTTCTCCGGAGTGTCTGGGTTGCTCGCAGACCACCAGGATATGCATTTATTGAGTTTGACGATAGGAGGGATGCGCTTGATGCGATTCATGCCTTGGATGGAAAAAATGGCTGGCGTGTAGAGCTTTCTCATAATTCTAAGGGTGGTGGTGGAGGCCGAGGTGGGCGTGGGCGTGGAGGTGAGGACCTGAAATGCTATGAATGTGGTGAAGCTGGACACTTTGCTCGGGAGTGTCGCATGCGCATTGGTTCACGAGGAGTAGGAAGCGGAAGGAGGCGGAGTCCTAGTCCATATAGACGTCGCAGAAGTCCAAGTTATGGGTATGGCCGCAGGAGTTATAGCCCTCGTGGGAGAAGATCTCCAAGACGACGTAGCATAACCCCTCCTCCACGTGGTTGCAGCTACAGCAGGTCCCCTCAGTACCGTCATTCTCGCCGTGATTCACCTTATGCCAATGGAGATTAA 543 0.5157 MSRIYVGNLDPRVTERDLEDEFRLYGVLRSVWVARRPPGYAFIEFDDRRDALDAIHALDGKNGWRVELSHNSKGGGGGRGGRGRGGEDLKCYECGEAGHFARECRMRIGSRGVGSGRRRSPSPYRRRRSPSYGYGRRSYSPRGRRSPRRRSITPPPRGCSYSRSPQYRHSRRDSPYANGD. 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03719 180 Gene3D - 1 73 IPR012677 -
Seca12g03719 180 MobiDBLite consensus disorder prediction 111 180 - -
Seca12g03719 180 CDD RRM_SRSF3_like 3 71 - -
Seca12g03719 180 SMART rrm1_1 3 69 IPR000504 GO:0003723
Seca12g03719 180 SMART c2hcfinal6 90 106 IPR001878 GO:0003676|GO:0008270
Seca12g03719 180 MobiDBLite consensus disorder prediction 166 180 - -
Seca12g03719 180 SUPERFAMILY Retrovirus zinc finger-like domains 80 107 IPR036875 GO:0003676|GO:0008270
Seca12g03719 180 ProSiteProfiles Zinc finger CCHC-type profile. 90 105 IPR001878 GO:0003676|GO:0008270
Seca12g03719 180 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 73 IPR000504 GO:0003723
Seca12g03719 180 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 61 IPR000504 GO:0003723
Seca12g03719 180 Pfam Zinc knuckle 90 105 IPR001878 GO:0003676|GO:0008270
Seca12g03719 180 Gene3D - 78 151 - -
Seca12g03719 180 MobiDBLite consensus disorder prediction 67 86 - -
Seca12g03719 180 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 169 - -
Seca12g03719 180 FunFam Serine/arginine-rich splicing factor RSZ21A isoform C 78 151 - -
Seca12g03719 180 FunFam Serine/arginine-rich splicing factor 7 2 69 - -
Seca12g03719 180 SUPERFAMILY RNA-binding domain, RBD 3 85 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03719 Seca-Chr12 95050438 95054657 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03719 2 59 Eukaryotic Initiation Factors Gene Family AT1G22760 43.548 6.52e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03719 K12896 - rcu:8262005 232.646