Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03710 ATGCAAGTTGAACCATTGATATCAAGAATTCAGGTTTCAGGGCTCAATATTTTACAGCAACTGAAGGTTTCACAGCAGTGTCTCCCTGATGATTTGGAACCTGAAACATCATCTGCCATTAAAGAAGCTATTGTGGAACAACTGGACGGTGTAGGACCCAGTCCAGAGGTCCTAGCAAAGATTGCTGAGAACCTGGGCCTCAGGTCTAATCAAGAGGTTCTGATTGAGGCTGTGGCCCTTGAAACGTTGAAGGAGATTGCTGAACAAACTGAAAAAACTACAGAAGCTGAATATATTGATCAAATGATCTCTGTTGTAAAATGTATGCATGAGCACCTTGTTATGCTTAAGCAATCTCAGAGATCTATCCCAGAGTCAGTTCCTGCTGATTTTTGCTGTCCTCTCTCTTTGGAGTTGATGACAGATCCAGTGATTGTGGCATCAGGGCAAACCTATGAGCGGGCTTTCATCAAGAACTGGATCGATCTTGGGCTTACTGTTTGTCCAAAGACACGTCAGTCTCTGGTTCGCACCAACCTAATACCTAATTACACTGTAAAGGCATTAATTGCAAACTGGTGTGAATCAAACAATGTGAAGCTTATTGATCCCATTAAATCCACAAACTTAAATCAACCATCTCTCCTTCGTGGGTCTATGGAGTCTGATTCAGCCAAGGAACTGCCTGTTGCAACACCGAATGGTGGAATCCACCAAGAGGGAACATCATCACTGCATCCCCATTCAACTCCAGCAGAACTGGTTCTGATTCCACTGCACTCTCTAATGCAAATTTTGCTCAAGGGTCAGGTGCTGCTGCCATGCCAACTCCAAATAGAGAGATTTGTCCCAAGGATAGTGTCATCTCCCTCTGTTGAAACAAGAGCTGATCCTTCTGGTACTGAAACCCATGTTCAGAAATTGGTTGAGGACTTGAAGAGCACTTCTCTTGATACTCAGAGGGAGGCAACAGCTGAACTCCGCCTTCTTGCTAAGCACAACACGGATAACCGAATTGAAAATTCTGTTACAGCACTTCTTAACTTGTCAATCAATGATAACAACAAAACAGCAATTGGACCTTTGATTCATGTCCTTAAGACAGGGAGCCCAGAAGCCAAGGAGAATTCAGCTGCCACTCTTTTCAGCTTATCAGTTGTTGAGGGAAACAAGATCAAGATAGGGAGGTCAGGGGCAATTGGACCACTGGTTGATTTATTAGGGAACGGAACCCCTAGGGGCAAGAAAGATGCTGCCACTGCTTTGTTTAATTTGTCAATATTTCATGAAAACAAGGACCGGATTGTGCAAGCTGGTGCAATCAAGAACCTTGTAGAGTTAATGGATCCCGCCGCTGGAATGGTTGATAAGGCAGTGGCTGTTTTAGCAAATCTTGCCACAATACCAGAAGGAAGAAGATCAATTGGTCAGGAAGGTGGGATTCCTGTTCTGGTTGAGGTTGTGGAGTTGGGTTCTGCAAGAGGAAAAGAGAATGCTGCAGCGGCTCTTCTACATCTATGCTCAGACAATCACAGATTCTTAAACATAGTGCTGCAAGAAGGAGCTGTGCCCCCATTAGTAGCATTGTCACAGTCAGGCACCCCAAGGGCCAAAGAAAAGGCCCTGGGTCTCCTTAATCAATTTAGAAGCCAAAGACATGGTGGTGCTGGGAGGGCTTGA 1680 0.4476 MQVEPLISRIQVSGLNILQQLKVSQQCLPDDLEPETSSAIKEAIVEQLDGVGPSPEVLAKIAENLGLRSNQEVLIEAVALETLKEIAEQTEKTTEAEYIDQMISVVKCMHEHLVMLKQSQRSIPESVPADFCCPLSLELMTDPVIVASGQTYERAFIKNWIDLGLTVCPKTRQSLVRTNLIPNYTVKALIANWCESNNVKLIDPIKSTNLNQPSLLRGSMESDSAKELPVATPNGGIHQEGTSSLHPHSTPAELVLIPLHSLMQILLKGQVLLPCQLQIERFVPRIVSSPSVETRADPSGTETHVQKLVEDLKSTSLDTQREATAELRLLAKHNTDNRIENSVTALLNLSINDNNKTAIGPLIHVLKTGSPEAKENSAATLFSLSVVEGNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIFHENKDRIVQAGAIKNLVELMDPAAGMVDKAVAVLANLATIPEGRRSIGQEGGIPVLVEVVELGSARGKENAAAALLHLCSDNHRFLNIVLQEGAVPPLVALSQSGTPRAKEKALGLLNQFRSQRHGGAGRA. 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03710 559 FunFam RING-type E3 ubiquitin transferase 126 201 - -
Seca12g03710 559 Gene3D - 289 553 IPR011989 -
Seca12g03710 559 SMART arm_5 386 427 IPR000225 GO:0005515
Seca12g03710 559 SMART arm_5 468 508 IPR000225 GO:0005515
Seca12g03710 559 SMART arm_5 428 467 IPR000225 GO:0005515
Seca12g03710 559 SMART arm_5 509 550 IPR000225 GO:0005515
Seca12g03710 559 CDD RING-Ubox_PUB 128 180 IPR045210 -
Seca12g03710 559 SUPERFAMILY ARM repeat 304 548 IPR016024 -
Seca12g03710 559 PANTHER U BOX DOMAIN-CONTAINING 340 547 - -
Seca12g03710 559 SMART Ubox_2 130 193 IPR003613 GO:0004842|GO:0016567
Seca12g03710 559 FunFam RING-type E3 ubiquitin transferase 339 554 - -
Seca12g03710 559 Pfam Armadillo/beta-catenin-like repeat 389 426 IPR000225 GO:0005515
Seca12g03710 559 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 207 IPR013083 -
Seca12g03710 559 SUPERFAMILY RING/U-box 115 204 - -
Seca12g03710 559 ProSiteProfiles U-box domain profile. 126 200 IPR003613 GO:0004842|GO:0016567
Seca12g03710 559 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 439 480 IPR000225 GO:0005515
Seca12g03710 559 Pfam U-box domain 127 197 IPR003613 GO:0004842|GO:0016567
Seca12g03710 559 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 398 440 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03710 Seca-Chr12 94868100 94870205 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03710 1 558 U-box Gene Family AT5G67340 50.322 0.0 543
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03710 - - pcin:129303726 638.262