Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03705 ATGCTGGTTCGCCTATTTCGTTACTATGCTGGTTGGGCAGATAAGATTCATGGTCTCACAGTTCCAGCTGATGGACCACACCATGTGCAAACACTGCATGAACCCATTGGTGTTGCTGGTCAGATCATTCCATGGAACTTCCCTCTTCTCATGTTTGCTTGGAAGGTGGGACCTGCTTTGGCCTGTGGCAACTCTATTGTTCTGAAAACAGCTGAGCAGACACCATTATCTGCTTTATATGCAGCAAAACTACTTCATGAGGCTGGACTTCCTCCTGGTGTTTTGAATATAGTATCTGGCTTTGGTCCAACTGCTGGTGCTGCACTTGCTAGTCACATGGATGTTGATAAGCTTGCCTTTACTGGTTCAACTGATACTGGAAAAGTTGTCCTTGAACTGGCGGCTAAAAGCAATCTTAAGCCTGTAACTTTGGAGCTTGGTGGGAAATCCCCCTTTATTGTATGTGAAGATGCTGATGTTGATCAGGCTGTTGAGCTAGCACACTTTGCCTTATTCTTTAATCAGGGACAATGTTGCTGTGCTGGGTCTCGAACATTTGTACATGAACGTGTATATGATGAGTTTGTTGAGAAAGCAAAGGCTAGAGCTTTAAAACGTATTGTTGGTGATCCATTCAAGGCAGGAATAGAGCAAGGTCCTCAGATTGATTCAGATCAATTTGAGAAAATACTGAGGTATATCAAATCTGGTGTTCAAAATGGGGCTACCCTTGAAACTGGAGGAGATAGGCTTGGCAGCAAAGGGTTCTATATTCAGCCTACTGTCTTCTCAAATGTCCAGGATAACATGCTGATTGCAAAGGAAGAGATCTTTGGTCCAGTGCAATCCATATTAAAATTCAAGGACCTTGGTGAGGTAGTTCAAAGAGCAAATAACACCCGTTATGGCCTTGCAGCAGGGATATTCACAAAGAATATAGACACTGCCAATACTTTGACTCGAGCATTGAGGGTTGGAACAGTATGGGTAAATACCTTTGATACATTTGATGCTGCAATTCCTTTTGGTGGGTACAAAATGAGCGGGCAGGGCAGAGAAAAAGGAGAGTATAGTCTTAAGAACTACTTGCAAGTGAAGGCTGTTGTGACTCCCTTGAAGAACCCTGCATGGCTTTGA 1137 0.4354 MLVRLFRYYAGWADKIHGLTVPADGPHHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNSIVLKTAEQTPLSALYAAKLLHEAGLPPGVLNIVSGFGPTAGAALASHMDVDKLAFTGSTDTGKVVLELAAKSNLKPVTLELGGKSPFIVCEDADVDQAVELAHFALFFNQGQCCCAGSRTFVHERVYDEFVEKAKARALKRIVGDPFKAGIEQGPQIDSDQFEKILRYIKSGVQNGATLETGGDRLGSKGFYIQPTVFSNVQDNMLIAKEEIFGPVQSILKFKDLGEVVQRANNTRYGLAAGIFTKNIDTANTLTRALRVGTVWVNTFDTFDAAIPFGGYKMSGQGREKGEYSLKNYLQVKAVVTPLKNPAWL. 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03705 378 FunFam Mitochondrial aldehyde dehydrogenase 2 150 339 - -
Seca12g03705 378 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 172 183 IPR016160 GO:0016491
Seca12g03705 378 Pfam Aldehyde dehydrogenase family 3 368 IPR015590 GO:0016491
Seca12g03705 378 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 150 339 IPR016163 GO:0016620
Seca12g03705 378 FunFam Aldehyde dehydrogenase, putative 340 366 - -
Seca12g03705 378 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 2 368 IPR016162 GO:0016491
Seca12g03705 378 SUPERFAMILY ALDH-like 3 372 IPR016161 GO:0016491
Seca12g03705 378 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 144 151 IPR029510 GO:0016491
Seca12g03705 378 FunFam Aldehyde dehydrogenase, mitochondrial 1 172 - -
Seca12g03705 378 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 1 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03705 Seca-Chr12 94679303 94682860 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03705 1 378 Aldehyde Dehydrogenase Gene Family AT3G48000 82.011 0.0 666
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03705 K00128 - gmx:100811891 726.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g03705 12 94679303 94682860 Seca12g03705 12 94679303 94682860 ECH
Seca10g02868 10 37815953 37820001 Seca12g03705 12 94679303 94682860 PCT