Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03701 ATGGTTGACAGAATCTTAGGGAGTGGTGGCTTTGGGGAAGTCTACAGAGGTGAATTACAAGATGGAACACTGGTGGCTGTCAAGAAAGCTAGAGTGGGGAACTTGAAAAGCACTCAACAAGTGCTTAATGAGGTTGCAATACTTTCTCAAGTCAATCACAAGAACCTAGTGAGACTCTTGGGCTGTTGTGTTGAATCTGAGCAGCCTTTGATGATCTATGAGTATATCTCAAATGGGACCCTCTATGACCATGTTCATGGTAGGTATTCCAACTTTCTAGACTGGAAAACAAGGCTTAAGGTTGCTTTTCAAACAGCTGAAGCATTATTGGCTAACCCAGGACTTAGTCATCTGTCAACCTGTGCTGAAGGAACACTGGGGTACTTGGATCCTGAATATTATAGAAACTACCAGATAACAGATAAAAGTGATGTTTATAGTTATGGGGTTGTGTTGCTAGAGCTTTTAACTTCCCAAAAAGCAATAGACTTCACTCGTGATCAAGATGATGTGAACCTAGCAATTCATGTGAGTCAATATCCTAAAAAAGAGAAACCATCATCAGAGATGCAAGGATATGAAGGCGGTCATCATCTAGAGATCTAA 606 0.4092 MVDRILGSGGFGEVYRGELQDGTLVAVKKARVGNLKSTQQVLNEVAILSQVNHKNLVRLLGCCVESEQPLMIYEYISNGTLYDHVHGRYSNFLDWKTRLKVAFQTAEALLANPGLSHLSTCAEGTLGYLDPEYYRNYQITDKSDVYSYGVVLLELLTSQKAIDFTRDQDDVNLAIHVSQYPKKEKPSSEMQGYEGGHHLEI. 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03701 201 MobiDBLite consensus disorder prediction 182 201 - -
Seca12g03701 201 ProSitePatterns Protein kinases ATP-binding region signature. 6 29 IPR017441 GO:0005524
Seca12g03701 201 Gene3D Transferase(Phosphotransferase) domain 1 1 111 - -
Seca12g03701 201 MobiDBLite consensus disorder prediction 187 201 - -
Seca12g03701 201 ProSiteProfiles Protein kinase domain profile. 1 201 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g03701 201 Pfam Protein tyrosine and serine/threonine kinase 126 184 IPR001245 GO:0004672|GO:0006468
Seca12g03701 201 Pfam Protein tyrosine and serine/threonine kinase 3 109 IPR001245 GO:0004672|GO:0006468
Seca12g03701 201 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 116 175 IPR044652 GO:0004672
Seca12g03701 201 Gene3D Transferase(Phosphotransferase) domain 1 112 194 - -
Seca12g03701 201 SUPERFAMILY Protein kinase-like (PK-like) 3 181 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03701 Seca-Chr12 94568906 94569627 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03701 3 185 Receptor kinase-like Gene Family AT5G02070 48.472 1.33e-70 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Seca12g03701 PK_Tyr_Ser-Thr 1.4e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03701 - - gmx:100804678 316.62