Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03694 ATGAGCTATCATATATCTAACACCATTTTAGATTTCTCTTGTTCTAATGTAATGAAGTTTCTTGGTAAAAGCCCCTTGCTATTACTTCTGCTGTTCAGCACCCTTCATCTTGTGTGTTCCCAAACTTTTGTTCATGATTGTGGCCTTAATATTCATTTTTCTTCAGCCTCAAATGGTTCATATTGTGAATTGTACAATTGGGGAGGGTTTACCGATAGCTGTTGTGGATTAGATTTTGGTGATTACCTATATGCCTTGGGGCTGAAGGCCAACCAAACTGGAAAAATATTCTTGAATTCCTCAGAGCAAAAAAGCTGCTTAGCATCAATGGAAGCTTTTGAGAGAAATTTCACAGGCTGTGGGGTAGAGAAGCTAGCAAGTGGAGTTGGTGGATGCTCTGACTACACTGTTACAGATGTTATCAACAAGCTTGGAGGGAACTTGAGGAAATTGGATGAAGATTGCATGCCTTTAAGCATAAATGGCAAGGCAAATGAAACTTGCACTACATGTTGGAAAGCATGGGAGGATATCAGTGCAAGATCAGAGGCAATTCTCAGTACTTATCTTTGTAGGTTTGCTGTGCTTGTCTCACTAACAAGCACAAGAATTTATGAAAGGGAATCAATTCAGGCAGTTTATAAATGCCTTGGGGGACACAGCCCTGCTGCAGATGAGCTAGAAGTCAAGGCTAGGGGCAATGCTAATATCAACCCAGGTCTCTGGATTCTTGCCTTTGGTTTAGCAGGAGTTACAGTAGTAGTTCTTCTTGCTGCTGCAATTGCATTGCTTGTCAGAAGAATTAGAAGTGCTCCAACCGTAGAAGATGAGTCTGAGTATTCAACATCACAAAAGATCACTTTGAAGGATGTTTATGTAGCAACTAACAATCTCAGCGCTTCAAATTTCATTGGCCAAGGCATAGCTGGAAAAGTGTACAAAGGTATACTCCCCAATGGGCACTATGTTGCAGTAAAGCATATCATCAAGGAAGGTTATATGGAGACATTTGTTAGAGAAGTGAGAAGCCTTTCCCATGTAAAACATCCAAATCTAGTAGCATTGCTTGGATACTGTGCAAATGAAGCTGAATGCTTCCTAGTGTATGAACTGTGCCACCACGGAAAGCTCTCAGATTGGCTATTTGGCAATGATAAAGTTCTTTCATGGATTCAAAGACTAGAGATTGCCATAGATAGCGCACGAGGTCTTGAGTTTCTCCACACCTACCCAGGTGGCTGCATAGTTCACCGTGATATAAAGGTATACACATAG 1275 0.411 MSYHISNTILDFSCSNVMKFLGKSPLLLLLLFSTLHLVCSQTFVHDCGLNIHFSSASNGSYCELYNWGGFTDSCCGLDFGDYLYALGLKANQTGKIFLNSSEQKSCLASMEAFERNFTGCGVEKLASGVGGCSDYTVTDVINKLGGNLRKLDEDCMPLSINGKANETCTTCWKAWEDISARSEAILSTYLCRFAVLVSLTSTRIYERESIQAVYKCLGGHSPAADELEVKARGNANINPGLWILAFGLAGVTVVVLLAAAIALLVRRIRSAPTVEDESEYSTSQKITLKDVYVATNNLSASNFIGQGIAGKVYKGILPNGHYVAVKHIIKEGYMETFVREVRSLSHVKHPNLVALLGYCANEAECFLVYELCHHGKLSDWLFGNDKVLSWIQRLEIAIDSARGLEFLHTYPGGCIVHRDIKVYT. 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03694 424 ProSiteProfiles Protein kinase domain profile. 298 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g03694 424 SUPERFAMILY Protein kinase-like (PK-like) 276 421 IPR011009 -
Seca12g03694 424 SMART tyrkin_6 298 424 IPR020635 GO:0004713|GO:0006468
Seca12g03694 424 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 103 421 - -
Seca12g03694 424 Pfam SPARK 46 183 IPR043891 -
Seca12g03694 424 Gene3D Transferase(Phosphotransferase) domain 1 373 423 - -
Seca12g03694 424 Pfam Protein tyrosine and serine/threonine kinase 301 420 IPR001245 GO:0004672|GO:0006468
Seca12g03694 424 FunFam Serine/threonine kinase protein 263 371 - -
Seca12g03694 424 Gene3D Phosphorylase Kinase; domain 1 260 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03694 Seca-Chr12 94512779 94515108 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03694 244 421 Receptor kinase-like Gene Family AT1G70130 36.264 5.68e-31 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_URK-2 Seca12g03694 SPARK 7.5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03694 - - gsj:114395768 573.548