Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03686 ATGGACGGCGCAAGTCTCCCCTTAAACGTAGACAAAAAGTTTATATTACGTAGAGGCAGTTTAGGATTTTACATGTATGCTATAGTTGAGCGTTCCGAAGGTTTTCCTGCACTTGAGATTGATCACATTAGGATTGTTTCCAAATTAATGAAAAACAGGTTCCACTATATGGCTATTGCAGAAGATAGACAGCGAGTGATGCCAACGCCAGAAGATAGATCTACTGGGCAACGCCTTGATTATGATGAAGCTGTTTTAATAACCCAACCTAGTAACCCAGAACTTCAAGGAGAGGTGGATGACAAATACCAATACTCTGTTGAGAACAAAGATAACAATCTTCATGGTTGGATTAACTTGGACTCCAGCTCCAATGAATCTGTGGGCTTCTGGATGATAACACCAAGTAGCGAGTTTCGTAACGATTCACAAGCCCTCTGGTCTGATGCTGTACAACAGCTGTCTGAGGAAATCAAAAGTTGGCCCTATGATTTCCCTAAATCAGATGATTTTTTCAAACCCAACAAACGAGGAACAATTCAAGGACGATTACTAGTCCAAGACAGGTACATTAATGGAGGGAGATTTCCATATGGCAATAATGCTTATGTTGGTCTGGCTCTACCTGGAGATTTGGGATCATGGCAAAACAATGCAAGGGGTTACCAATTTTGGGCTCAAGCTGACAAGATAGGTCACTTCACAATTGAAAACGTCGTACCGGGGGACTACAATTTGTATGCATGGGTTCCTGGCATTTTTGGGGATTACATATGTAACACTACTATAACAATCACACCAGGATGTATGATCCAATTGGGTTCCCTAATATTCAGTCCTCCAAGAAATGGACCTACCATATGGGAAATTGGCATCCCAGATCGCTCTGCTGCAGAGTTTTATGTTCCAGATCATTATCCTAACCTTGTCAACCGATTATACATTGGGAAACCAGAACACAAGTTTAGGCAATATGGACTATGGCAGCGTTACACTGAGTTATATCCAAATCAGGACCTCGTTTATAATGTTGGTGTTAGTGATTATCGTAAAGATTGGTTTTATGCTCAGGTTACCAGGAACATAGGAAACAACACATTTCGCCCAACCACATGGGAGATTAGATTTCATCTACCATTTGTTATAAGAGGAAACTACACTCTTCAACTTGCATTGGCCTCAGCTGCAAGTTTTACCTTAGTGGTTCGGTTCAATAACCCTGTGGCTATTCCTATGCACTTCTCTACTGGATTGATCGGCCAAGACAATGCAATAGCAAGACATGGCATCCATGGATTGCACTGGCCTTACAACATTGAATTACCTAGCCATCTATTGGTAGAAGGAAACAACATAATCTATCTGAGGCAGGCTAAAGGTGTAACTCCTTTCCAAGGTATTATGTATGACTACATCCGTTTGGAAAGTCCTGGAACTTGA 1440 0.4139 MDGASLPLNVDKKFILRRGSLGFYMYAIVERSEGFPALEIDHIRIVSKLMKNRFHYMAIAEDRQRVMPTPEDRSTGQRLDYDEAVLITQPSNPELQGEVDDKYQYSVENKDNNLHGWINLDSSSNESVGFWMITPSSEFRNDSQALWSDAVQQLSEEIKSWPYDFPKSDDFFKPNKRGTIQGRLLVQDRYINGGRFPYGNNAYVGLALPGDLGSWQNNARGYQFWAQADKIGHFTIENVVPGDYNLYAWVPGIFGDYICNTTITITPGCMIQLGSLIFSPPRNGPTIWEIGIPDRSAAEFYVPDHYPNLVNRLYIGKPEHKFRQYGLWQRYTELYPNQDLVYNVGVSDYRKDWFYAQVTRNIGNNTFRPTTWEIRFHLPFVIRGNYTLQLALASAASFTLVVRFNNPVAIPMHFSTGLIGQDNAIARHGIHGLHWPYNIELPSHLLVEGNNIIYLRQAKGVTPFQGIMYDYIRLESPGT. 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03686 479 SUPERFAMILY Starch-binding domain-like 173 273 IPR013784 GO:0030246
Seca12g03686 479 Pfam Polysaccharide lyase family 4, domain III 286 474 IPR029411 -
Seca12g03686 479 Pfam Polysaccharide lyase family 4, domain II 200 272 IPR029413 -
Seca12g03686 479 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 141 477 - -
Seca12g03686 479 CDD RGL4_M 176 276 IPR029413 -
Seca12g03686 479 Gene3D - 173 271 - -
Seca12g03686 479 Pfam Rhamnogalacturonate lyase family 3 99 IPR010325 -
Seca12g03686 479 SUPERFAMILY Galactose-binding domain-like 283 475 IPR008979 -
Seca12g03686 479 CDD RGL4_C 288 475 - -
Seca12g03686 479 Gene3D - 283 475 - -
Seca12g03686 479 FunFam Rhamnogalacturonate lyase B 173 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03686 Seca-Chr12 94233334 94238075 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03686 6 477 Polysaccharide Lyase AT4G38030 48.780 2.66e-170 493
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03686 K18195 - gmx:100792575 595.89