Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03676 ATGCCTGAGGGGTGGATTGAACCATTAAAAGGATGTGGGGATGACAAGGTAGGAGGCTTTATAGTTTCGCCGTCGTCGCGTTTCGCCAGATTTTCGGTGGGGGTGGTGGAGTTGGAGAAGAGGAGGAAGAGAGGAGAAGAGGAGGAGGAGGAGGTTGGGGAAGAGTTGAATTTTGACTCTGATGAGGTAATTGAGATTGGAAAGTTGGAGGAGAATGGGGGAAACAATTTCAATGCAAATAACAATAACAATGATAATGGGAATGGTGTCACCAGTGGAAAGAAGAAAGTGATGCCAACGAAAAATCTCATGGCTGAGAGGAGGCGTAGGAAGAAACTCAATCATAGGTTGTACATGTTTCGCTCTGTTGTGTTGTTGTTCCATCAATGGAGGAAGCTAGGGCACAGAGCACATAGATGA 420 0.4595 MPEGWIEPLKGCGDDKVGGFIVSPSSRFARFSVGVVELEKRRKRGEEEEEEVGEELNFDSDEVIEIGKLEENGGNNFNANNNNNDNGNGVTSGKKKVMPTKNLMAERRRRKKLNHRLYMFRSVVLLFHQWRKLGHRAHR. 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03676 139 MobiDBLite consensus disorder prediction 71 103 - -
Seca12g03676 139 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 91 130 IPR036638 GO:0046983
Seca12g03676 139 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 54 124 - -
Seca12g03676 139 Coils Coil 35 55 - -
Seca12g03676 139 MobiDBLite consensus disorder prediction 73 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03676 Seca-Chr12 94007279 94007828 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03676 41 124 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 49.425 1.57e-10 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03676 - - csav:115700779 82.0333