Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03667 ATGTCTCTCTGTGCTGCACTCTCCTCCACAACTTCCCACCTCACCACCATCCTTCCATCTCTCCCTTCCACCTCTCCACTTTCTCGCAGATTTTCCTTCACTTTCCGGGAAAACAGAAACCCAATCCTCTCCCCTCACCGGCACTCGTTTTCAACAAGGCCTACCAGAGTCTTGGTAAAGTCTCAGACTACTGCACCTGCTTCTTCTGAGGCTGTCAAAGTGACACCTGTTCCTTCTGACATGAAAGCCTGGGTCTATGGGGAATATGGTGGTGTGGATGTTTTGAAGTTTGACTCCAATGTTGCTGTGCCTGATGTGAAGGAAGATCAGGTTCTTGTCAGAGTTTTTGCTGCAGCTCTTAACCCTGTTGATGCCAAGAGAAGGCAGGGAAAGTTCAAGGCCACTGATTCTCCTCTTCCGACTGTTCCAGGCTATGACGTTGCCGGTGTGGTAGTGAAGGTTGGTAGTCAAGTAAAGGACTTCAAAGAGGGTGATGAAGTATATGGGAATGTAAACGAGAAAGCACTAGAAGGGCCTAAGCAGTTTGGGTCTCTGGCTGAGTACACAGCTGTTGAGGAGAAATTGTTGGCACCAAAACCTAAGAATTTGGACTTTGCTCAAGCTGCTGGTCTTCCTCTAGCAATTGAGACTGCTTATGAGGGTTTGGAGAGGACTGGATTTTCATCTGGTAAATCTATTCTTGTTCTAAATGGTTCTGGTGGAGTTGGAAGCCTAGTGATTCAGCTAGCTAAGCAAGTTTTTGGAGCTTCAAGAGTTGCTGCCACTTCCAGCACTAGAAATTTGGAGCTGTTGAAAAGCCTGGGAGCTGATTTGGCTATTGACTACACAAAGGATAATTTTGAAGACTTACCAGAAAAATTTGATGTAGTTTATGATGCCATCGGGCAATGTGACAGGGCAGTGAAGGCTATCAAAGAAGGTGGCAGTGTGGTAGCACTGACAGGTGCTGTTACACCACCTGGCTTTAGATTTGTAGTAACTTCCAATGGAGCTGTTCTGAGGAAATTAAACCCTTATTTAGAGAGTGGAAAAGTGAAGCCAATTGTAGACCCCAAAGGTCCATTCCCCTTTTCCCAGCTTGCTGAAGCCTTCTCTTACCTTGAAACAAACCGAGCTACCGGAAAGGTTGTTATACATCCCATCTCATGA 1170 0.4607 MSLCAALSSTTSHLTTILPSLPSTSPLSRRFSFTFRENRNPILSPHRHSFSTRPTRVLVKSQTTAPASSEAVKVTPVPSDMKAWVYGEYGGVDVLKFDSNVAVPDVKEDQVLVRVFAAALNPVDAKRRQGKFKATDSPLPTVPGYDVAGVVVKVGSQVKDFKEGDEVYGNVNEKALEGPKQFGSLAEYTAVEEKLLAPKPKNLDFAQAAGLPLAIETAYEGLERTGFSSGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLELLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIGQCDRAVKAIKEGGSVVALTGAVTPPGFRFVVTSNGAVLRKLNPYLESGKVKPIVDPKGPFPFSQLAEAFSYLETNRATGKVVIHPIS. 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03667 389 CDD MDR_like_2 81 385 - -
Seca12g03667 389 Gene3D - 88 385 - -
Seca12g03667 389 Gene3D - 222 336 - -
Seca12g03667 389 PANTHER NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC 72 388 IPR044626 GO:0016628
Seca12g03667 389 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 203 326 IPR036291 -
Seca12g03667 389 SUPERFAMILY GroES-like 79 235 IPR011032 -
Seca12g03667 389 ProSiteProfiles Pterin-binding domain profile. 271 389 IPR000489 GO:0042558
Seca12g03667 389 Pfam Alcohol dehydrogenase GroES-like domain 109 172 IPR013154 -
Seca12g03667 389 SMART PKS_ER_names_mod 90 385 IPR020843 GO:0016491
Seca12g03667 389 Pfam Zinc-binding dehydrogenase 274 385 - -
Seca12g03667 389 ProSitePatterns Quinone oxidoreductase / zeta-crystallin signature. 230 251 IPR002364 GO:0008270|GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03667 Seca-Chr12 93632795 93636277 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03667 105 311 Monolignol Biosynthesis Gene Families AT4G39330 25.751 3.60e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03667 K18980 - gmx:100810816 616.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g03667 12 93632795 93636277 Seca12g03667 12 93632795 93636277 ECH