Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03662 ATGGCTCCCAAGCACCCCCCAAACAATGATTCTCCTTCTCCTTCTCCTTCTTCTTCTCCATCATTAACACAACGCAAAGATTCAAAGAAGAAATCAGGCAAGGGCCCTCGTAACAAGTATTCAACTCCATCAGCCAAGCTTCACAATTCAGACTCTCCCAAAAGTGCTCCGCCAGAATCGCCGCCTCGGTCCAAGTTTTTTCCGCCGCCTAAAGGTTTAGCTCCATTGCCACCACCACCACCCAAAACACCATCACCACCCCCACCCTCTCCACCACTCCCCTCACCACCACCTCCCTCTCCACCACCACCCTCACCGCGACCTTCACCACCGCCACAGCGCAATGGCAATTCTTCCACCTCTCCTCTTAGTTATCCACGTAAACAGTCACCGCCTACACCGCTGTTCCAAGCCCCACCTCCCCCTGAGAGGTCTTCATCTCCGCCACCTTCGCGTAGTGCACCGTCCAATGATTCAAACCATCAAGCCGTGCACGGTGGTGGGTCCCATGCAAAATCAAGGGATTCTTCTCCCGGCTCCTCTCAAGGGGATAATTCAGGAAAATATATTGGCTATACTCTCGCTGGGGTTTTCATTGTTGCCTTAGTTGCTGTAGCTGTAATTTTCACTTTTAGGAGGAAGAAAGGAAAAGGGGATGTCTATGGTGCACCCTACATGCCACCCCCTAATAACTTTCACGTAAGACCAAGTGCTGATGGGAATTATTATGTACAACAGCCTTCCCTTGGAAGGAACTATGGAAGTGGGAAGATTGGAGGAAGCATGAAGCATCTAGGAGGTCCTTTAGAGTCGGCACAGCCCAAGAGTGCTCAGGTAGCATTTAGTTATGACATGGTTATGGAAATAACTAATTCATTTTGCAATGAAAACATTATAGGGGAAGGAGGATTCGGGTGTGTTTACAAAGGTTGGCTGCCGGGTGGAAAAGCTGTTGCGGTGAAGCAGCTTAAGGCTGGTAGTGGGCAGGGAGATAGGGAATTCAGGGCTGAAGTGGAAATTATTAGCCGTGTTCATCATCGACATTTGGTATCATTGGTTGGTTATTGCATATCTGAGCAGCAAAGAGTGCTTATCTATGAGTATGTTCCTAATGGAACACTCCATCAGCACTTGCATGGAAGTGGAAGGCCAGTGTTGGATTGGGCCAAGAGGCTGAAGATAGCAATAGGTGCTGCAAAGGGACTGGCATATCTGCATGAGGACTGCAGCCAAAAGATTATTCACAGAGATATTAAGTCCGCAAATATACTTTTGGATGATTCTTTTGAGGCACAGGTTGCAGACTTTGGACTTGCAAGGCTAGCCGATGCTGCCAATACCCATGTATCAACTAGGGTTATGGGGACCTTTGGGTACATGGCTCCAGAGTATGCAACAAGTGGAAAATTAACAGATAGATCAGATGTTTTCTCATTTGGGGTTGTCCTCCTTGAGCTTGTAACTGGAAGGAAACCTGTTGATGAAACTCGGCCTTTGGGAGATGAGAGTTTGGTTGAGTGGGCTCGTCCGCTTCTCCTTCGTGCAGTTGAGACACGTGACTTTGGTGCGCTACTAGACCCAAGACTTGAAAATCACTTTGTGGAGAGTGAAATGTTCAGAATGATTGAGGCAGCTGCAGCTTGTGTTCGCCACTCAGCTCCTAAACGGCCTCGTATGGCTCAGGTGTTAAGAGCCCTAGACAGAGGAGATGAAATATCTGATTTATCAAACGGGGTTAAATATGGTCAGAGCACTGTTTATGATTCTGGGCAGTATGATAGAGACATAGAGCTATTTAGGAGGATGGCCAATGGCAGCTTTGTTGATTCTGATTTTGATATGTACAGTAGAAATTACAGTTTTTCAAGAGAGACGCCTAGATCCCAACATGCGTGGATGTTGAATAGTTCTAGTGGCGAGTCAGAATATAGTGCTTTCAACAAGCATAGGAGCAGTACTGAATGA 1965 0.4723 MAPKHPPNNDSPSPSPSSSPSLTQRKDSKKKSGKGPRNKYSTPSAKLHNSDSPKSAPPESPPRSKFFPPPKGLAPLPPPPPKTPSPPPPSPPLPSPPPPSPPPPSPRPSPPPQRNGNSSTSPLSYPRKQSPPTPLFQAPPPPERSSSPPPSRSAPSNDSNHQAVHGGGSHAKSRDSSPGSSQGDNSGKYIGYTLAGVFIVALVAVAVIFTFRRKKGKGDVYGAPYMPPPNNFHVRPSADGNYYVQQPSLGRNYGSGKIGGSMKHLGGPLESAQPKSAQVAFSYDMVMEITNSFCNENIIGEGGFGCVYKGWLPGGKAVAVKQLKAGSGQGDREFRAEVEIISRVHHRHLVSLVGYCISEQQRVLIYEYVPNGTLHQHLHGSGRPVLDWAKRLKIAIGAAKGLAYLHEDCSQKIIHRDIKSANILLDDSFEAQVADFGLARLADAANTHVSTRVMGTFGYMAPEYATSGKLTDRSDVFSFGVVLLELVTGRKPVDETRPLGDESLVEWARPLLLRAVETRDFGALLDPRLENHFVESEMFRMIEAAAACVRHSAPKRPRMAQVLRALDRGDEISDLSNGVKYGQSTVYDSGQYDRDIELFRRMANGSFVDSDFDMYSRNYSFSRETPRSQHAWMLNSSSGESEYSAFNKHRSSTE. 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03662 654 CDD STKc_IRAK 299 568 - -
Seca12g03662 654 Pfam Protein tyrosine and serine/threonine kinase 296 564 IPR001245 GO:0004672|GO:0006468
Seca12g03662 654 ProSitePatterns Serine/Threonine protein kinases active-site signature. 413 425 IPR008271 GO:0004672|GO:0006468
Seca12g03662 654 Gene3D Transferase(Phosphotransferase) domain 1 369 581 - -
Seca12g03662 654 MobiDBLite consensus disorder prediction 55 115 - -
Seca12g03662 654 ProSiteProfiles Protein kinase domain profile. 293 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g03662 654 MobiDBLite consensus disorder prediction 150 166 - -
Seca12g03662 654 PRINTS Proline rich extensin signature 6 18 - -
Seca12g03662 654 PRINTS Proline rich extensin signature 90 106 - -
Seca12g03662 654 PRINTS Proline rich extensin signature 50 62 - -
Seca12g03662 654 PRINTS Proline rich extensin signature 68 89 - -
Seca12g03662 654 MobiDBLite consensus disorder prediction 1 184 - -
Seca12g03662 654 MobiDBLite consensus disorder prediction 37 54 - -
Seca12g03662 654 MobiDBLite consensus disorder prediction 127 149 - -
Seca12g03662 654 ProSitePatterns Protein kinases ATP-binding region signature. 299 321 IPR017441 GO:0005524
Seca12g03662 654 Gene3D Phosphorylase Kinase; domain 1 266 368 - -
Seca12g03662 654 SMART serkin_6 293 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g03662 654 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 199 616 IPR047117 -
Seca12g03662 654 FunFam proline-rich receptor-like protein kinase PERK8 369 581 - -
Seca12g03662 654 FunFam Proline-rich receptor-like protein kinase PERK8 267 368 - -
Seca12g03662 654 SUPERFAMILY Protein kinase-like (PK-like) 273 566 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03662 Seca-Chr12 93503652 93508490 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03662 178 620 Trihelix Transcription Factor Family AT1G70460 62.690 0.0 577
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Seca12g03662 PK_Tyr_Ser-Thr 7.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03662 - - gmx:100797563 752.666