Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03661 ATGGGTAGTTTAGGGGTTGTGGAGTGGCTTAGACCCCTTGTGGAGACCAAGGGTTGGGATTACGTAGTTGTTTGGAAATATGGAGAAGATCCATCTAGGTTTATTGAGTGGATGGGTTGCTGTTGTAGAGGGAGTTGCAGTGGAAACATTGAGCAGGTGAAGCCCAAAGAGGAAATGGGTGAACAATACCACTTGGCTCCCATTTGCAGGGATACCCTCTTTCAGCATCCAGTTAGAACAAAGACTTGTGAGGCTCTTGCCCAGCTTCCTTTAGCAATGTCTCTGTATTCTGGTGTGCATGGAGAGGTTGCAATATCACAACAACCAAGATGGCTTACTCGCGAGGATTCAGTTGTAACTCAAGTTTTGATCCCTATTGTTGGTGGTCTCATCGAGCTCTTCACTGCAAAGCTGATTCCAAAAGATATAAATGTCATAGAGTTCATAACATCGCACTGTTGTGTCTCTATAAAGCAAGAAGCCATATCAGCACAGAGCTACACCAGTCTGAACTTCAATGAACATTACACTTTAACTCCTGGTGTCCATCTGCCTGCAGCAAACTGGTGCAGCTCCAATCCTACCATTGAAGGACCCTCTGGTGGATCTAATCCTTTAATTGATCACCCATCATCTGATTCAAAGTTTGTTTGCTTGATTCCTCATGAATATCTGAAGCAATCAGTTAAAGTATCTCCTACCCCAAAATCTAAAAAGCCAAAGCACAATGACTCTTCAAGGAAATGGCAGAGAGATTTGAGTTACCATTGTGGCAATGGGGAAGAAGATAAAGCAAAATTGATCTGGAAACCTCAAAAGGAAGGTTACCATGCTAAAAATCTTGTCACAGAGAGAAATAGGAGGAACAGAATAAAAAAAGGGCTTTTTACTCTACGATCTTTAGTCCCAAAGATAACCAAGATGGATAGAGCAGCAATTCTTGCAGATGCAATTGACTATATAAAGGAATTGCAGAGGCAAGTGAAAGAACTTAAAGAAGAGGTCAGTGCTTTGGAAGTACAAGACTGTGAGAAGAACACACTACAATTGAGGATGCCAACAGGCAAAGGACAAGGAGGAACCCCTCTCACAGAGCTTAATGAAGGTTCTTCTGATTGCACCAAAATGACGCAGATAGAGCAGGCACAAGCAGAAGTGAATCACATTGGCAGGACAGATTTCTTGATTAAGTTATACTGTGAGCAGAAACAAGGTGGATTTTCAAGGTTGATGGAAGCTATACATTCTCTTGGATTGCATGTGACTAATGCCAATATGACCACATTTGATGGCAAAGTCCTGAACATTTTGACGGTTGAGGCAACTGAGCAGGATATTCACCCAACGAAACTGAAAGAGTATTTGATACAGCAAACAGGTTGA 1383 0.4215 MGSLGVVEWLRPLVETKGWDYVVVWKYGEDPSRFIEWMGCCCRGSCSGNIEQVKPKEEMGEQYHLAPICRDTLFQHPVRTKTCEALAQLPLAMSLYSGVHGEVAISQQPRWLTREDSVVTQVLIPIVGGLIELFTAKLIPKDINVIEFITSHCCVSIKQEAISAQSYTSLNFNEHYTLTPGVHLPAANWCSSNPTIEGPSGGSNPLIDHPSSDSKFVCLIPHEYLKQSVKVSPTPKSKKPKHNDSSRKWQRDLSYHCGNGEEDKAKLIWKPQKEGYHAKNLVTERNRRNRIKKGLFTLRSLVPKITKMDRAAILADAIDYIKELQRQVKELKEEVSALEVQDCEKNTLQLRMPTGKGQGGTPLTELNEGSSDCTKMTQIEQAQAEVNHIGRTDFLIKLYCEQKQGGFSRLMEAIHSLGLHVTNANMTTFDGKVLNILTVEATEQDIHPTKLKEYLIQQTG. 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03661 460 Gene3D - 270 342 IPR036638 GO:0046983
Seca12g03661 460 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 141 457 - -
Seca12g03661 460 SMART finulus 281 330 IPR011598 GO:0046983
Seca12g03661 460 CDD ACT_UUR-ACR-like 395 457 - -
Seca12g03661 460 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 10 151 IPR025610 -
Seca12g03661 460 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 275 324 IPR011598 GO:0046983
Seca12g03661 460 MobiDBLite consensus disorder prediction 237 252 - -
Seca12g03661 460 MobiDBLite consensus disorder prediction 230 252 - -
Seca12g03661 460 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 277 341 IPR036638 GO:0046983
Seca12g03661 460 Coils Coil 314 341 - -
Seca12g03661 460 Pfam Helix-loop-helix DNA-binding domain 282 325 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03661 Seca-Chr12 93500467 93503622 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03661 93 457 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10610 28.726 1.53e-38 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca12g03661 bHLH-MYC_N 1.4e-16 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03661 - - gsj:114423672 630.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g03661 12 93500467 93503622 Seca12g03661 12 93500467 93503622 ECH