Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03653 ATGTATAAGCAAGTTATGAGCCGTTTTGCCCATTTCAATGCTATTCAACTAAGTGATCCAGTCCCCTTGAAAGAGTTGATTATATTGGCACTGAAAGGAGAGGATTTAGATTCAGAATGTAATGATGATGACGACTTCAAAGTGAAGATTGTAGAAGTTGTTGCTGTGAAAAAACTTCATGATGCAGTTGATGGAGAAATGCCTAAAGCGTTTACAAATGAGGTTCGAGCCTTGACAGAAATCAAACATCGTAACATTATGAAGTTGTATGGATTTTGTTCCCATCCGCGCTACCCTTTATTAGTTTTTGAGTTCGTAGAAGGAGGGAGCTTGGATAAAGTACTAAACATGGATGCACAAGCAATAATGTTTGATTGGAATAAGAGGGTCAAAGGTGTGGCAAATGCTTTGTACCATATGCATCATGGTTGCTCTCCTGAAACTTAA 447 0.3826 MYKQVMSRFAHFNAIQLSDPVPLKELIILALKGEDLDSECNDDDDFKVKIVEVVAVKKLHDAVDGEMPKAFTNEVRALTEIKHRNIMKLYGFCSHPRYPLLVFEFVEGGSLDKVLNMDAQAIMFDWNKRVKGVANALYHMHHGCSPET. 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03653 148 PANTHER LEUCINE RICH REPEAT KINASE 2 47 146 - -
Seca12g03653 148 Pfam Protein tyrosine and serine/threonine kinase 53 141 IPR001245 GO:0004672|GO:0006468
Seca12g03653 148 Gene3D Transferase(Phosphotransferase) domain 1 41 147 - -
Seca12g03653 148 ProSiteProfiles Protein kinase domain profile. 1 148 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g03653 148 SUPERFAMILY Protein kinase-like (PK-like) 52 142 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03653 Seca-Chr12 93260904 93261763 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03653 53 146 Receptor kinase-like Gene Family AT4G08850 52.941 6.87e-29 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca12g03653 PK_Tyr_Ser-Thr 1.7e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03653 - - lja:Lj2g3v2879660.1 151.754