Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03641 ATGTCTTCGGCGCCGAACCCGGAGTTCGACACGGCACCGGCCACTGTAGCATACAACACCCCACCGGCATTGATAGCATTTACCCTAGCGGTCCTGGTTCTGTGCTTCGTGGCTTTCAGCATTGTGTACTTGTGCAAGCATTGTTTTTCAAACGTTATCCACACTTGGGAGTTTCAACGCACTGCCTCAGGCTCCATCATTCGTTTCGCACCTCACACGTCACCCCCTAGAGGCCTCGACCCTTCGGTTCTGGAGGGCTTCCCCACCTTTTTATATGCCTCTGTGAAGGACCTCCGCAAGGAGAAGCACAGCCTGGAATGCGCCATTTGCTTGCTAGAGTTCGAGGACGACAGCATGCTTCGCTTCTTGACTGTTTGCTGCCATGTCTTCCACCAAGAATGCATTGACCTTTGGCTTCGTTCCCACAAGACATGCCCCGTTTGTCGAGCCGACCTTGATTCAATGCCAAAATGTGAGGAGGAGAACAACAACCATAATGCACTGCAGGAGCCCTCCTGCACTGATGACAACATACGCATTGATGTCAAACAAGGTGATGCCAGCGCTGGAGATCAAAGCCAACATCAACATCAAAGTATGAACATGCAGCAAAGGGAAGAACAGAGGTTTGCAAGGTCACACTCAACTGGACATTCCATAGTTATGATTAGAGGAGGAGGAGGAGATGAAGAAAAAGAAGATGATAAATATACCTTGAGATTGCCCGAACATGTCATAAGAGGATGGCACAACAACTGCACCAGGAGTTGTAGAAGTTGCAGGGAGATGATTGGGCCTGAACCTTGTACTAATTGTGCCTTTCTTCAACCCCTATCTGCCTCCTCTCCCCTTGGCCATGCTCAACAATCTTGA 873 0.4971 MSSAPNPEFDTAPATVAYNTPPALIAFTLAVLVLCFVAFSIVYLCKHCFSNVIHTWEFQRTASGSIIRFAPHTSPPRGLDPSVLEGFPTFLYASVKDLRKEKHSLECAICLLEFEDDSMLRFLTVCCHVFHQECIDLWLRSHKTCPVCRADLDSMPKCEEENNNHNALQEPSCTDDNIRIDVKQGDASAGDQSQHQHQSMNMQQREEQRFARSHSTGHSIVMIRGGGGDEEKEDDKYTLRLPEHVIRGWHNNCTRSCRSCREMIGPEPCTNCAFLQPLSASSPLGHAQQS. 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03641 290 FunFam E3 ubiquitin-protein ligase ATL6 68 155 - -
Seca12g03641 290 Pfam Ring finger domain 106 149 IPR001841 -
Seca12g03641 290 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
Seca12g03641 290 SUPERFAMILY RING/U-box 93 155 - -
Seca12g03641 290 MobiDBLite consensus disorder prediction 187 206 - -
Seca12g03641 290 MobiDBLite consensus disorder prediction 185 233 - -
Seca12g03641 290 PANTHER RING FINGER DOMAIN-CONTAINING 14 158 - -
Seca12g03641 290 SMART ring_2 107 148 IPR001841 -
Seca12g03641 290 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 155 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03641 Seca-Chr12 93029211 93030083 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03641 22 247 Rapid Response to Elicitors AT2G35000 34.568 2.30e-38 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03641 - - gmx:100815505 353.984
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g03641 12 93029211 93030083 Seca10g01312 10 13172544 13173395 PCT