Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03640 ATGGATTACGGTCGCGAGGGTAACGTGGTTCAAATAATGACCGGCGGCAGTGGGGGAGGAGAAAGCTGGTCGGGGGAGCAAGCGGATTGGGCGACTGAAGACGAATACCGATTCTGGAACAGCAATGATGGTGTGGAAACGAGCCAGTCTCAGTCGCGTTCAGGGAGCGAACCGCCGAGTAAGAAGGCGAGAAATTCTTCCTCGCAGGATGGGGGACGGTCAAAGGCGATTGGGAAGATGTTCTTCAAGACTAAGCTATGCTGCAAATTTCGTGCTGGTACCTGTCCCTACATCACCAACTGCAATTTCGCCCACAGCATCGAGGAGCTTCGTCGCCCGCCGCCCAATTGGCAGGAAATTGTTGCCGCCCATGAAGAGGAGAAGGCTGTGCTAATGTCAGAGCCAAGGGAGGAGTTCCAGATTCCCACTATTGGATCTTCTGCTTATTCAGGGGACGTGTCGCAGAGGTCTTATAAGGGTCGCCATTGCAAGAAATTTTACACCGAGGAAGGATGTCCCTACGGGGATAGTTGTACGTTTCTTCATGATGAGCAATCCAAGAATCGCGAGAGCGTCGCTATAAGTTTGGGTCCTGGTGGTTATGCTGGTGGTGGCGGTGCTACTGCTGCTGCCACTAGTGCTGCTGCCGCTGCTGCTGGGACTGGGACTGGGACTGGACCTAATTCAAAGCCTTCTAACTGGAAAACTAGGATTTGCAATAAGTGGGAGATGACTGGGTATTGCCCATTTGGCAATAAATGCCATTTTGCTCATGGTGCTACAGAATTGCACAGATATGGAGGTGGACTTATGGACGGAGAAAACAGAGACACTGCTTCTGCTGTTGCGCCTGACACAAAGCAGGGAGTAGCTTCAAAAAGTGTTGCTGATAATGTGGTTGCATCAGCTACTCCTGTTGCTCATTCTGATGTTTATCATATTGGAGTCCCTTCACAGAGGCCTTCCATTGTGATTCAGAGGCCAGGACAGAGAACTCATCAGAAGTGGAAAGGTCCAGACAAAATCAGCAGGATATATGGTGATTGGATTGATGACATTGAATAG 1065 0.5033 MDYGREGNVVQIMTGGSGGGESWSGEQADWATEDEYRFWNSNDGVETSQSQSRSGSEPPSKKARNSSSQDGGRSKAIGKMFFKTKLCCKFRAGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEEKAVLMSEPREEFQIPTIGSSAYSGDVSQRSYKGRHCKKFYTEEGCPYGDSCTFLHDEQSKNRESVAISLGPGGYAGGGGATAAATSAAAAAAGTGTGTGPNSKPSNWKTRICNKWEMTGYCPFGNKCHFAHGATELHRYGGGLMDGENRDTASAVAPDTKQGVASKSVADNVVASATPVAHSDVYHIGVPSQRPSIVIQRPGQRTHQKWKGPDKISRIYGDWIDDIE. 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03640 354 MobiDBLite consensus disorder prediction 1 74 - -
Seca12g03640 354 Gene3D - 77 112 - -
Seca12g03640 354 Gene3D - 227 265 - -
Seca12g03640 354 FunFam zinc finger CCCH domain-containing protein 15-like 227 266 - -
Seca12g03640 354 SUPERFAMILY CCCH zinc finger 79 112 IPR036855 GO:0046872
Seca12g03640 354 ProSiteProfiles Zinc finger C3H1-type profile. 233 261 IPR000571 GO:0046872
Seca12g03640 354 MobiDBLite consensus disorder prediction 41 73 - -
Seca12g03640 354 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 82 106 IPR000571 GO:0046872
Seca12g03640 354 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 234 259 IPR000571 GO:0046872
Seca12g03640 354 SUPERFAMILY CCCH zinc finger 155 185 IPR036855 GO:0046872
Seca12g03640 354 Gene3D - 149 199 - -
Seca12g03640 354 ProSiteProfiles Zinc finger C3H1-type profile. 81 108 IPR000571 GO:0046872
Seca12g03640 354 PANTHER CCCH ZINC FINGER/TIS11-RELATED 219 278 IPR045877 GO:0003729
Seca12g03640 354 SMART c3hfinal6 81 107 IPR000571 GO:0046872
Seca12g03640 354 SMART c3hfinal6 233 260 IPR000571 GO:0046872
Seca12g03640 354 SMART c3hfinal6 157 184 IPR000571 GO:0046872
Seca12g03640 354 FunFam Zinc finger, CCCH-type 151 189 - -
Seca12g03640 354 Pfam CCCH-type zinc finger 161 183 IPR041367 -
Seca12g03640 354 FunFam Zinc finger CCCH domain-containing protein 77 113 - -
Seca12g03640 354 ProSiteProfiles Zinc finger C3H1-type profile. 157 185 IPR000571 GO:0046872
Seca12g03640 354 SUPERFAMILY CCCH zinc finger 231 264 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03640 Seca-Chr12 93026339 93028445 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03640 235 263 C3H Transcription Factor Family AT1G68200 62.069 2.89e-07 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca12g03640 zf-CCCH 1.1e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03640 - - gmx:100788208 569.311