Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03636 ATGGCTAAGCGAAAGGCTGTTGGGAAACTGAACCTAACACTCCAATCTCCCTTCCACAAGACAAGACTACATATTGGGCAGTTGGTGAAGGATACATCAGCTAAACTTAAGCAAGCTAGTGACATTGATCACCATGTTGGAGTTAATGCAAGCAAGAAGATAGCAGATGCTAAACTTGCAAAAGATTTTCAGGCAGTGTTGAAAGAATTTCAGAAGGCACAACGTCTTGCAGCTGAGAGGGAAACAGCTTACACTCCTTTTGTTCCGCAAGCAGTTCTTCCATCAAGCTATACAGCTAGTGAAGTAGATGTTGGTTCTGATAAGACTCCAGAACAGCAAGCCCTTCTCGTGGAATCCAGGAGGCAGGAGGTTTTATTTTTAGATAATGAGATTGCCTTCAATGAGGCTATCATTGAGGAAAGGGAGCAAGGCATTCAAGAAATACAGCAGCAAATTGGTGAAGTCAATGAGATTTTCAAAGATCTTGCTGTTCTTGTTCATGAGCAAGGAGCCATGATTGATGATATTGGTTCCAACATTGAGAACTCCCATGCAGCTACTGCACAAGCAAAATCTCAACTTGCAAAAGCGTCAAAAACACAAAGATCAAATTCATCTTTGGCATGCTTGCTTTTGGTGATATTTGGGATTGTGCTTCTCATTGTGATCATAGTTCTTGCTGCTTAG 687 0.4163 MAKRKAVGKLNLTLQSPFHKTRLHIGQLVKDTSAKLKQASDIDHHVGVNASKKIADAKLAKDFQAVLKEFQKAQRLAAERETAYTPFVPQAVLPSSYTASEVDVGSDKTPEQQALLVESRRQEVLFLDNEIAFNEAIIEEREQGIQEIQQQIGEVNEIFKDLAVLVHEQGAMIDDIGSNIENSHAATAQAKSQLAKASKTQRSNSSLACLLLVIFGIVLLIVIIVLAA. 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03636 228 SUPERFAMILY t-snare proteins 18 190 IPR010989 GO:0016020|GO:0016192
Seca12g03636 228 Gene3D - 111 228 - -
Seca12g03636 228 Gene3D - 8 88 - -
Seca12g03636 228 FunFam Syntaxin-22 like 128 228 - -
Seca12g03636 228 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 135 197 IPR000727 -
Seca12g03636 228 FunFam Syntaxin 18 88 - -
Seca12g03636 228 Pfam SNARE domain 172 223 IPR000727 -
Seca12g03636 228 Pfam Syntaxin-like protein 14 84 IPR006011 GO:0016020
Seca12g03636 228 ProSitePatterns Syntaxin / epimorphin family signature. 141 180 IPR006012 GO:0005484|GO:0006886|GO:0016020
Seca12g03636 228 PANTHER SYNTAXIN 9 220 IPR045242 -
Seca12g03636 228 SMART tSNARE_6 130 197 IPR000727 -
Seca12g03636 228 CDD SNARE_Qa 155 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03636 Seca-Chr12 92358391 92365950 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03636 14 216 SNARE and Associated Proteins AT5G46860 77.833 1.40e-112 322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03636 - - gmx:547656 310.071