Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03612 ATGGGTGCTAGAGGTCCTGATGATGAGGACAACAGGTGGCCACTATGGCTGAAGCCTCTGCTCAAAGAGAGTTTTTTTGTTCAATGCAAGTTGCACGCTGATTCACACAAGAGCGAGTGCAATATGTATTGCTTGGATTGTATGAACGGTGCTCTTTGCTCTCTCTGTCTCGCTTACCACAAAGATCACCGTGCTATCCAGATAAGGAGGTCATCATACCATGATGTGATTAGGGTCAATGAGATTCAGAAGGTATTGGACATCACAGAGGTTCAAACCTACATTATCAACAGTGCAAGGGTCGTGTTCTTGAATGAGAGGCCTCAGCCAAGGCCTGGGAAAGGCGTCACCAACACTTGCGAAGTCTGCGAGCGTAGCCTTCTCGATTCCTACCGATTCTGTTCTTTGGGTTGCAAGATTGTTGGAACTTCAAGGAATTTCCAGAAGAAGACAATAGCGTCAGACTCAGAGGATTCATACAGCAGCAGTAGCAGCCATGGCAGGCTGAAGAACAGCAAGGTGCAGAGCTTCACTCCATCCACACCGCCACCAACTTCTGTTAATTACAGAACTGCAAAGAGAAGAAAGGGAATACCACACCGTGCCCCAATGGGAGGACTAGTCATGCAATACTAG 636 0.4748 MGARGPDDEDNRWPLWLKPLLKESFFVQCKLHADSHKSECNMYCLDCMNGALCSLCLAYHKDHRAIQIRRSSYHDVIRVNEIQKVLDITEVQTYIINSARVVFLNERPQPRPGKGVTNTCEVCERSLLDSYRFCSLGCKIVGTSRNFQKKTIASDSEDSYSSSSSHGRLKNSKVQSFTPSTPPPTSVNYRTAKRRKGIPHRAPMGGLVMQY. 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03612 211 Pfam PLATZ transcription factor 69 140 IPR006734 -
Seca12g03612 211 MobiDBLite consensus disorder prediction 152 211 - -
Seca12g03612 211 MobiDBLite consensus disorder prediction 152 188 - -
Seca12g03612 211 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 7 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03612 Seca-Chr12 85879260 85881784 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Seca12g03612 PLATZ 5.5e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03612 - - vra:106774881 389.037
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g03612 12 85879260 85881784 Seca12g03612 12 85879260 85881784 ECH
Seca12g03612 12 85879260 85881784 Seca12g03612 12 85879260 85881784 PCT