Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03611 ATGATACATGAACTAACACATGATGACATTAGACGTCTGGAGTTCGGTTATGAGGGTGAGGCATATAGTTTTTATTTGGATTATGCCAAACAACGAGGGTTTGCTGTGAGGAAAGATGATATTGAGCGAAATGAGAATGGTGATATTGTTAAGCGGTATTTAGTGTGTAATAAGGAGGGAACAAGGGACAAGAAACACTTGGAGAGAAAGGACAGAGTGAGGGAGGCGAGGCCAATTACTCGTGTGCAGTGCACAGTGTCTGCATTCCACGACGATCATAACCTTGAGTTAACTCCTCCAACGTATGTTCACATGATGCCAGCTTATAGACGATTGAGTGAATCTGATAAAGCTCAAATTGATACCCTGCATGCAGCCGGTGTGAGAACTTGCCATATTATGAGTTTTATGATTGGACAGAAAGGGGGACATGGTGAATTAGGTTTCTATAAAAAGGACATGTATAACCACATTGATAAACAGAAGAGGGCTAATATAGAGGATGGTGATGCATTTGCAGCACTGTGTTATTTGTAG 537 0.4134 MIHELTHDDIRRLEFGYEGEAYSFYLDYAKQRGFAVRKDDIERNENGDIVKRYLVCNKEGTRDKKHLERKDRVREARPITRVQCTVSAFHDDHNLELTPPTYVHMMPAYRRLSESDKAQIDTLHAAGVRTCHIMSFMIGQKGGHGELGFYKKDMYNHIDKQKRANIEDGDAFAALCYL. 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03611 178 Pfam FAR1 DNA-binding domain 23 85 IPR004330 -
Seca12g03611 178 PANTHER OS01G0519700 PROTEIN 13 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03611 Seca-Chr12 85829672 85830251 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca12g03611 FAR1 1.9e-11 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03611 - - ccaj:109792835 214.542