Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03590 ATGGCATCTGAAGGCTTCACCGACAAGAACACTCTGTTCAGGAAACTCAAGGCGAAGTCCGAAAATAAGATGTGTTTCGATTGTAATGCGAAGAACCCAACCTGGGCATCCGTCACGTATGGGATCTTTCTCTGCATCGATTGTTCCGCCGTTCATCGTAGTCTCGGCGTGCACATCAGCTTCGTGAGATCTACAAATTTAGACTCATGGAGTTCTGAGCAACTAAAAATGATGAGCTTTGGAGGAAATAACCGTGCACAAGTTTTCTTTAAGCAACATGGTTGGACCGATGGTGGTAAAATAGAGGCGAAGTATACATCCAGGGCTGCAGAGTTGTATAGGCAAATTCTTTCAAAGGAAGTAGCTAAAAGTATGTCTAAGGAGGCAAGCTTGCCTTCATCACCTGTTGCTTCTCAGTCTGGCCAAGGGGCTAATGGACTTCCTCATGTGAGGACAGATGAAGTGCCAAAAGAAATCACTCTTGTGGAAAAGCCAGAAAAGCCTGAGAGCACTTCTTCACCTCGAGCTTCGCATACAGTAGTTTCAAGTACTGTGAAGAAGCCTATCGGGGCCAAAAAAACTGGGAAGGGTGGGGGGCTTGGTGCCCGAAAGCTCACTAGAAAGCCAAGTGAGTCTCTCTATGACCAGAAGCCTGAAGAACCACCTGCTCCAGTTTCATCCTCAACAAACAACAATTTACCTTCTGGGCCATCTCTGACATCCCGGTTTGAGTATGTAGAAAATGTCCAATCATCTGAGTTGAACTCTGGAGGTTCAAATGTACTCAGTCACGTTTCTCCACCAAAGTCATCAAGCTTCTTTGCAGACTTTGGAATGGATAGTGGCTTTCCGAAGAAATCTGGGCCAAGCTCCTCAAAAGTGCAAATTCAGGAGTCTGATGAAGCAAGAACGAAGTTCTCAAATGCTAAATCTATTTCATCATCCCAATTTTTTGGAGAGCAGAACAAGACAGCAGATGTGGATGCGCAAGTTACTCTGTCAAAGTTTTCAGGTTCAACTGCCATCTCCAGTGCCGATCTATTTGGTGACTCGAGAGATAACTCCTCCATTGATCTTGCTGCTACCAACCTCATCAATCGATTGTCATTCCAGGCACAACAGGATATCTCTTCCCTTAAGAACATTGCAGGAGAGACTGGGAAGAAGCTCAGCTCTTTGGCCTCCTCTTTAATGACAGATCTTCAGGATCGAATCCTCTAA 1221 0.4529 MASEGFTDKNTLFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSSEQLKMMSFGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYRQILSKEVAKSMSKEASLPSSPVASQSGQGANGLPHVRTDEVPKEITLVEKPEKPESTSSPRASHTVVSSTVKKPIGAKKTGKGGGLGARKLTRKPSESLYDQKPEEPPAPVSSSTNNNLPSGPSLTSRFEYVENVQSSELNSGGSNVLSHVSPPKSSSFFADFGMDSGFPKKSGPSSSKVQIQESDEARTKFSNAKSISSSQFFGEQNKTADVDAQVTLSKFSGSTAISSADLFGDSRDNSSIDLAATNLINRLSFQAQQDISSLKNIAGETGKKLSSLASSLMTDLQDRIL. 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03590 406 ProSiteProfiles ARF GTPase-activating proteins domain profile. 10 128 IPR001164 GO:0005096
Seca12g03590 406 Pfam Putative GTPase activating protein for Arf 12 106 IPR001164 GO:0005096
Seca12g03590 406 MobiDBLite consensus disorder prediction 151 171 - -
Seca12g03590 406 MobiDBLite consensus disorder prediction 128 146 - -
Seca12g03590 406 SUPERFAMILY ArfGap/RecO-like zinc finger 11 124 IPR037278 -
Seca12g03590 406 CDD ArfGap_ArfGap2_3_like 8 123 - -
Seca12g03590 406 PANTHER ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED 6 406 - -
Seca12g03590 406 FunFam ADP-ribosylation factor GTPase-activating protein AGD10 1 137 - -
Seca12g03590 406 Gene3D Arf GTPase activating protein 2 138 IPR038508 -
Seca12g03590 406 MobiDBLite consensus disorder prediction 128 240 - -
Seca12g03590 406 PRINTS HIV Rev interacting protein signature 62 83 IPR001164 GO:0005096
Seca12g03590 406 PRINTS HIV Rev interacting protein signature 22 41 IPR001164 GO:0005096
Seca12g03590 406 PRINTS HIV Rev interacting protein signature 41 58 IPR001164 GO:0005096
Seca12g03590 406 MobiDBLite consensus disorder prediction 222 240 - -
Seca12g03590 406 SMART arf_gap_3 10 126 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03590 Seca-Chr12 84514271 84521221 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03590 13 91 C2H2 Transcription Factor Family AT4G21160 46.250 6.61e-20 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03590 K12493 K11855 gmx:100785169 672.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g03590 12 84514271 84521221 Seca12g03590 12 84514271 84521221 ECH
Seca12g03590 12 84514271 84521221 Seca12g03590 12 84514271 84521221 PCT