Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03589 ATGAATGAGGCATCGATTCCAATAGCCCAAGGTGTAGATAAATGGATCAAAAATATTCATGAAAATATCGTGCAACATGACCAGGAGAGTGTTGTTGACTATACACCATACTTGGAAATGGAGTTTGAATCTGAGGTTGCGGCCTATGAGTTTTATAATGAGTACAGTAGAAGAATTGGGTTTGGTATTCGTCGAGAATATGGAAATAAAAGCAAAAGAGATGGATATCTAACTTCAAGAAGGTCCGCATGCTTCAAAGAGGGTAAACGGGGTGTTGACAAACGAGACCATTTGACAAAAGAGCCCATAGCAGAAACTAGAACAGGATGTGAATCACGTATGGTTATTTCACTTGATCGAAAGATTGGGAAATACAAGGTTATTGACTTTGTAGCTCAACATAATCATCCTCTTCAACCGCCAGAATATGTTCATATGATTCCCTCCCATCGACACATATCTGAGTCACAAGCATCACAAATTGTATTGGCAGATGAATCTGGATTGAAACCAAAAGATTTTCATGAATATGTGTCCAAGCAAGTTGGTGGAATAGAAGGTGTTGGTTATACAAGACAAGATCATAAGAATTACCTCCGAACTAGAAGAAAACAGTCTTTAAGGCAAACAATTGTTTTTGGGGCAACATTGCTATATGATGAAATAATTCCTTCTTTTCAGTGGTTATTTGAAACTTTTCTGAGAGCAATGGGTGGAGAAAAGCCTAAAACCATTCTAACAGATCAAGATGCAGTAATGGCTAAGGCTATTTCTTTAGTTATGCCAGAAACATTTCATGGATTATGTACTTGGCATATAAGAGAAAACGCCCTTAGGCATGTGAACCATCTATATCAAAAGAGTTCACAATTTTGCTCAGATTTTGAAGCATGCATTGATCTACATGAGGAAAAAGGTGAATTTTTGAATGCATGGAGTGCTTTACTTGTTGACCATAGTGTTTCTGATGATTCATGGCTACACACAATTTTTCGAGTGAAGGAAAAATGGGCATGGGGTTATGTTCGAAAAACTTTCACTGCAGATTTAAATTTGGTACAATTTTTTACACACATGGAAAGAGTTGTCAATGGAAAAAGGTACAATGAGTCAGAAGCTGATTATGAGTCAAGACATAAGCTGCCTAGATTGAAAATGAAGAAGGCCCCTATGCTTGTACAAGCTGTAAACATTTACACTCCAAAAATATTTGAGGAATTCCAAGAGGAATATGAGGAATATCAAGGCACTTGCATAAAGGAAATGAAAGAAGGGTTGTACATTGTTACAAATTATGATAACAGTAAGGAGCGAATAGTATTGGGGAATGTTGTGGATCAAAAGGTTGTTTGTGATTGTCGTAAATTTGAGACTCATGGTATCTTATGCAGTCATGCTTTGAAAGTTTTGGATGTGATGAATATTAAGTTAATTCCCCAACATTATATACTAAAGAGATGGACGAGAGATGCAAGGTCAGGAAGAAATCGAGATTGGAAAGGAAAACATGTTGAATTGGATATAAAAGCCCATTTCATGAAGAGGTGCAATGAGTTATGTCCTCGAATGATTAAATTGACAGATAGAGCATGTGAATCTCATGAAACTTACACATTTTTGTCCAAAGTTTGTGAAGAGTCTAATAAAATAATTGAAGTTATGTTAGCTAAAAAGTCTATGGATGGAGAAACAATGGGAAGGTGTGATGTATCCATATCAATTGCAAGTGGAAATATTGACAACAATGTGATCAACATGGATTTTGGTGGAGCAAAAGGCATAAAGAAGCGAGATTGCTCATATAAGGCTAAAAAATGA 1818 0.3625 MNEASIPIAQGVDKWIKNIHENIVQHDQESVVDYTPYLEMEFESEVAAYEFYNEYSRRIGFGIRREYGNKSKRDGYLTSRRSACFKEGKRGVDKRDHLTKEPIAETRTGCESRMVISLDRKIGKYKVIDFVAQHNHPLQPPEYVHMIPSHRHISESQASQIVLADESGLKPKDFHEYVSKQVGGIEGVGYTRQDHKNYLRTRRKQSLRQTIVFGATLLYDEIIPSFQWLFETFLRAMGGEKPKTILTDQDAVMAKAISLVMPETFHGLCTWHIRENALRHVNHLYQKSSQFCSDFEACIDLHEEKGEFLNAWSALLVDHSVSDDSWLHTIFRVKEKWAWGYVRKTFTADLNLVQFFTHMERVVNGKRYNESEADYESRHKLPRLKMKKAPMLVQAVNIYTPKIFEEFQEEYEEYQGTCIKEMKEGLYIVTNYDNSKERIVLGNVVDQKVVCDCRKFETHGILCSHALKVLDVMNIKLIPQHYILKRWTRDARSGRNRDWKGKHVELDIKAHFMKRCNELCPRMIKLTDRACESHETYTFLSKVCEESNKIIEVMLAKKSMDGETMGRCDVSISIASGNIDNNVINMDFGGAKGIKKRDCSYKAKK. 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03589 605 Pfam MULE transposase domain 207 276 IPR018289 -
Seca12g03589 605 Pfam SWIM zinc finger 448 471 IPR007527 GO:0008270
Seca12g03589 605 Pfam FAR1 DNA-binding domain 50 140 IPR004330 -
Seca12g03589 605 SMART 26again6 449 476 IPR006564 GO:0008270
Seca12g03589 605 ProSiteProfiles Zinc finger SWIM-type profile. 427 474 IPR007527 GO:0008270
Seca12g03589 605 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 25 549 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03589 Seca-Chr12 84508076 84510297 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca12g03589 FAR1 2.1e-20 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03589 - - mtr:112416745 621.313