Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03588 ATGGCGTCCGACAGCTTCACCGACAAGAACACTGTGTTCAGGAAACTCAAGGCGAAGTCAGAAAATAAGATGTGTTTCGATTGCAATGCGAAGAACCCAACTTGGGCATCTGTAACGTATGGAATCTTCCTATGCATCGATTGCTCTGCCGTTCATCGTAGTCTCGGCGTGCACATCAGCTTCGTGAGATCTACAAACCTGGACTCATGGAGTCCTGAGCAACTAAAAATGATGAGCTTTGGAGGAAACAATCGTGCACAGGTTTTCTTTAAGCAACATGGTTGGACTGATGGTGGTAAAATTGAAGCGAAATATACATCCAGAGCTGCAGAGTTGTATAGGCAAATTCTCTCAAAGGAAGTAGCTAAAAGTATGGCTGAGGAGGGAAGCCTGCCTGCATCACCTGTTGCTTCTCAGTCTGCCCAAGGGGCTAATGGACTTACTGATGTCAGGACCAGTGAAGTACCGAAAGAAAGCACTTTGGAGAAGCCAGAAAAGCCTGAGAGCACTTCTTCACCAAGAGCTTCACATACAGTAGTATCAAATACTGTAAAGAAGCCTATTGGGGCTAAAAAACCAGGGAAGAGTGCGGGGCTTGGTGCTCGTAAGCTAACTAGAAAGCCAAGTGAGTCTCTCTATGAGCAGAAACCTGAAGAACCACCTGCTCCAGTTTCATCCACAACAAACAACAATTTGTCTGCTGGGCCATCTCTGACATCTCGGTTTGAGTATGTTGAAAATGTCCAATCATCTGAGTTGAATTCTGGAGGTTCACATGTCATTAGTCACGTGTCTCCACCAAAGTCATCAAGCTTCTTTGCTGACTTTGGAATGGATAGTGGCTTTCCAAAGATGTCTGGGCCCAGCTCCTCAAAACTGCAAGTTCAGGAATCTGATGAAGCAAGGAGGAAGTTCTCAAATGCTAAATCTATTTCTTCATCCCAATTTTTTGGAGATCAGAACAAGGCAGCAGATGCGGACGCTAAAGTTACTTTGTCAAAGTTTTCAGGTTCAACTGCAATCTCCAGTGCTGATCTTTTTGGTGACTCAAGAGATAACTCCCCCATTGATCTTGCTGCCAGCGACCTCCTCAATCGATTATCTTTCCAGGCACAACAGGATATCTCCTCCCTTAAGAACATTGCAGGAGAGACTGGGAAGAAGCTCAGCTCCTTCGCCTCCACCTTGATGACAGATCTCCAGGACCGAATCCTCTAA 1218 0.4557 MASDSFTDKNTVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSPEQLKMMSFGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYRQILSKEVAKSMAEEGSLPASPVASQSAQGANGLTDVRTSEVPKESTLEKPEKPESTSSPRASHTVVSNTVKKPIGAKKPGKSAGLGARKLTRKPSESLYEQKPEEPPAPVSSTTNNNLSAGPSLTSRFEYVENVQSSELNSGGSHVISHVSPPKSSSFFADFGMDSGFPKMSGPSSSKLQVQESDEARRKFSNAKSISSSQFFGDQNKAADADAKVTLSKFSGSTAISSADLFGDSRDNSPIDLAASDLLNRLSFQAQQDISSLKNIAGETGKKLSSFASTLMTDLQDRIL. 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03588 405 ProSiteProfiles ARF GTPase-activating proteins domain profile. 10 128 IPR001164 GO:0005096
Seca12g03588 405 SUPERFAMILY ArfGap/RecO-like zinc finger 11 125 IPR037278 -
Seca12g03588 405 Gene3D Arf GTPase activating protein 1 140 IPR038508 -
Seca12g03588 405 MobiDBLite consensus disorder prediction 284 304 - -
Seca12g03588 405 SMART arf_gap_3 10 126 IPR001164 GO:0005096
Seca12g03588 405 PRINTS HIV Rev interacting protein signature 41 58 IPR001164 GO:0005096
Seca12g03588 405 PRINTS HIV Rev interacting protein signature 22 41 IPR001164 GO:0005096
Seca12g03588 405 PRINTS HIV Rev interacting protein signature 62 83 IPR001164 GO:0005096
Seca12g03588 405 PANTHER ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED 5 405 - -
Seca12g03588 405 MobiDBLite consensus disorder prediction 221 237 - -
Seca12g03588 405 MobiDBLite consensus disorder prediction 131 237 - -
Seca12g03588 405 MobiDBLite consensus disorder prediction 155 170 - -
Seca12g03588 405 MobiDBLite consensus disorder prediction 133 154 - -
Seca12g03588 405 CDD ArfGap_ArfGap2_3_like 8 123 - -
Seca12g03588 405 FunFam ADP-ribosylation factor GTPase-activating protein AGD10 1 137 - -
Seca12g03588 405 Pfam Putative GTPase activating protein for Arf 11 106 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03588 Seca-Chr12 84279452 84288174 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03588 13 91 C2H2 Transcription Factor Family AT4G21160 46.250 9.14e-20 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03588 K12493 K11855 gmx:100785169 714.146