Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03586 ATGACAGAGTACCGGTCGTCGTCGACGATGAATCTCTGGACCGATGACAACTCCTCCGTGATGGAGGCCTTCATGAGTTCCTCCGATCTCTCTTCCCTCTGGCTGCCAACGCCGCATTCTGCCACATCCACCACCGCTCCTGTACCCGACCCAACCCGAGCCCCGCCGCCACCACAGCAATCCCAACCTCTGTTTAACCAGGAGACTCTCCAGCAGCGGCTACTGGCGCTGATCGAAGGCGCCAGGGAGGGCTGGACCTATGCCATATTTTGGCAACCGTCGTATGAATACTCTTCTGGCGGTCCCCTTCTGGGTTGGGGCGATGGCTATTACAAGGGTGAGGAGGACAAGGGAAAAGGGAAAGCCACAAAAACAGTAACGTCTTCCGCGGAGCAGGACCACCGTAAGAAGGTACTCCGCGAGCTCAATTCACTAATTTCCGGCCCCTCCGCCTCCACTGATGATGCGGTTGATGAAGAGGTAACTGACACCGAGTGGTTCTTCCTTGTATCGATGACCCAATCCTTTGTCAACGGCAGCGGCCTGCCGGGCCAGGCTTACTTCAACTCCAGCCCCGTCTGGGTCTCCGGTGCTGACAAATTATCAAGTTCGGCCTGTGAACGGGCCCGTCAGGGGCAGATCTTTGGGCTTCAGACTTTAGTCTGTATACCAACACCGTCTGCAAACGGTGTGGTAGAGCTGGCCTCCACGGAAGTAATTCCCCAGAACCCTGACCTCATGAATAAGGTGCGGGTTTTGTTTAACTTCAACAACCTGGACGGAGGAGGTTCTTGGCCATTGAATTCTGTTACGACTGATCAGGGCGAAAATGATGCTTCATCCCTCTGGCTCAGTGATCCCTCAACTGGGGTCGAAATCAGGGATTCCGTTAATGCCGCTACTGTGCCGGCTTCCACGAATACAACAGTGAAGACCTTGCAGTTCGAAACACATGGTTCTTCCAGCACTCTAACCGAAACCCCAAGTGCTGTTCACGATTCCAACACTCAGCGCCAGCAGGGCTTCTTCCCGAGGGAACTCAACTTTTCCAGTTCCCTGAAGCCCGAATCCGGCGAGATTCTGAGCTTTGGGGAGAGCAAGAAGAGCTCTTACAGCACCAATGGCAATTTCTTTTCCGGTCAGTCGCAGTTCGCCGCCGCAGAGGAGAATAAAAAGAGGAGGTCCCCTGCATCCAAGAGTACCATTGATGATGGAATGCTCTCCTTCACTTCCGGTGTGATTTTGCCGGTTTCAAATATGAAATCCGGTGTTGGTGGCGGCGGCGGTGACTCCGATCATTCAGATCTCGAAGCTTCTGTGGTGAAGGAGGATGACAGCAGCAGGGTGGTGGAACCAGAGAAACGACCGCGGAAAAGAGGGCGAAAGCCGGCGAATGGCAGAGAGGAGCCGTTGAATCATGTTGAAGCTGAGAGGCAGAGGAGAGAAAAGCTGAATCAGAGGTTCTATGCTCTTCGCGCGGTGGTTCCTAACGTGTCGAAGATGGACAAGGCGTCGCTTTTGGGCGATGCCATATCTTACATAAATGAGCTGAAGTCTAAGCTTCAGGGGCTGGAAACGGCGAAAGTTGAATTGGAGAAGGAATTGGATTCCGCTAAAAAGGAACTTGAGCTGACAAGTGCAAATCCACCACCACCACCTCCACCTGATAAAGAAGCCAAGTCATCGTGCAAGTTGATTGATTTGGAAATAGACGTGAAGATCATGGGTTGGGATGCGATGATTAGGATCCAATGCAGTAAGAAGAACCACCCTGCGGCGAGGTTGATGGCAGCGTTGAAGGAACTTGACCTGGATGTCAACCATGCCAGCGTGTCGGTAGTGAACGATTTGATGATTCAACAGGCGACGGTGAACATGGGAAGTCGATTTTACACGCAGGAGCAGCTCTTGTTAGCTCTCTCATCCAAAGTTGGCGGCGATGCACGATAG 1950 0.5292 MTEYRSSSTMNLWTDDNSSVMEAFMSSSDLSSLWLPTPHSATSTTAPVPDPTRAPPPPQQSQPLFNQETLQQRLLALIEGAREGWTYAIFWQPSYEYSSGGPLLGWGDGYYKGEEDKGKGKATKTVTSSAEQDHRKKVLRELNSLISGPSASTDDAVDEEVTDTEWFFLVSMTQSFVNGSGLPGQAYFNSSPVWVSGADKLSSSACERARQGQIFGLQTLVCIPTPSANGVVELASTEVIPQNPDLMNKVRVLFNFNNLDGGGSWPLNSVTTDQGENDASSLWLSDPSTGVEIRDSVNAATVPASTNTTVKTLQFETHGSSSTLTETPSAVHDSNTQRQQGFFPRELNFSSSLKPESGEILSFGESKKSSYSTNGNFFSGQSQFAAAEENKKRRSPASKSTIDDGMLSFTSGVILPVSNMKSGVGGGGGDSDHSDLEASVVKEDDSSRVVEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELKSKLQGLETAKVELEKELDSAKKELELTSANPPPPPPPDKEAKSSCKLIDLEIDVKIMGWDAMIRIQCSKKNHPAARLMAALKELDLDVNHASVSVVNDLMIQQATVNMGSRFYTQEQLLLALSSKVGGDAR. 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03586 649 SMART finulus 474 523 IPR011598 GO:0046983
Seca12g03586 649 Coils Coil 514 548 - -
Seca12g03586 649 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 468 517 IPR011598 GO:0046983
Seca12g03586 649 PANTHER MYC 30 642 IPR045084 GO:0003700|GO:0006355
Seca12g03586 649 MobiDBLite consensus disorder prediction 317 337 - -
Seca12g03586 649 MobiDBLite consensus disorder prediction 420 478 - -
Seca12g03586 649 MobiDBLite consensus disorder prediction 384 403 - -
Seca12g03586 649 MobiDBLite consensus disorder prediction 435 478 - -
Seca12g03586 649 FunFam Transcription factor bHLH13 461 535 - -
Seca12g03586 649 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 70 254 IPR025610 -
Seca12g03586 649 Pfam Helix-loop-helix DNA-binding domain 472 517 IPR011598 GO:0046983
Seca12g03586 649 Gene3D - 460 547 IPR036638 GO:0046983
Seca12g03586 649 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 467 534 IPR036638 GO:0046983
Seca12g03586 649 CDD bHLH_AtAIB_like 465 541 - -
Seca12g03586 649 MobiDBLite consensus disorder prediction 35 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03586 Seca-Chr12 84237990 84239939 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03586 1 645 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 57.293 0.0 656
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca12g03586 bHLH-MYC_N 4.8e-52 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03586 K13422 - gmx:100790854 847.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g03586 12 84237990 84239939 Seca12g03586 12 84237990 84239939 ECH