Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03579 ATGGGAGACGTGGCTAAGGACCTTGCAGCTGGGACAGTCGGAGGTGCAGCACAATTGATATGTGGACACCCCTTTGACACCATCAAGGTCAAGCTCCAAAGCCAGCCTGCACCACTCCCTGGTCAGCCTCCCAAGTATGCTGGTGCATTTGATGCTGTCAAGCAGACAATAGCAGCTGAAGGTCCGAGGGGTTTATACAAAGGTATGGGTGCCCCACTTGCTACGGTGGCTGCCTTCAATGCTGTCTTGTTTACAGTGAGGGGACAAATGGAAGCATTAGTGAGGTCCCATCCTGGTGCCCCCCTCACAGTGAATCAGCAGGTTGTTTGTGGAGCAGGAGCTGGAGTTGCTGTTTCCTTTCTTGCTTGCCCAACTGAATTGATCAAATGCAGGTTGCAAGCACAAAGTGCACTTGCTGGCTCTGGAACAGCTGCTGTGGCTGTTAAGTATGGAGGACCCATGGATGTGGCCAGACATGTTCTGCGGTCAGAGGGGGGTATGAGAGGTCTTTTCAAGGGCTTGGTTCCCACTATGGGACGTGAGATACCTGGAAATGCTATAATGTTTGGTGTATATGAAGCATTAAAGCAATGGTTTGCCGGAGGCACTGATACTTCTGGACTAGGTAGAGGTTCTCTGATTGTCGCTGGAGGCTTGGCTGGAGCTTCCTTCTGGTTCATGGTTTACCCAACTGATGTTGTTAAAAGTGTGATTCAAGTTGATGATTACAAAAATCCAAAGTTTTCTGGTTCATTTGATGCTTTCAGAAAGATTAAAGCTTCAGAGGGGTTCAAAGGCCTGTATAAGGGTTTTGGGCCTGCAATGGCCCGAAGTGTTCCTGCAAATGCAGCATGCTTCTTAGCATATGAGATGACAAAATCAGCTCTGGGATGA 894 0.4888 MGDVAKDLAAGTVGGAAQLICGHPFDTIKVKLQSQPAPLPGQPPKYAGAFDAVKQTIAAEGPRGLYKGMGAPLATVAAFNAVLFTVRGQMEALVRSHPGAPLTVNQQVVCGAGAGVAVSFLACPTELIKCRLQAQSALAGSGTAAVAVKYGGPMDVARHVLRSEGGMRGLFKGLVPTMGREIPGNAIMFGVYEALKQWFAGGTDTSGLGRGSLIVAGGLAGASFWFMVYPTDVVKSVIQVDDYKNPKFSGSFDAFRKIKASEGFKGLYKGFGPAMARSVPANAACFLAYEMTKSALG. 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03579 297 FunFam mitochondrial carnitine/acylcarnitine carrier-like protein 2 296 - -
Seca12g03579 297 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 4 295 - -
Seca12g03579 297 ProSiteProfiles Solute carrier (Solcar) repeat profile. 208 295 IPR018108 -
Seca12g03579 297 Pfam Mitochondrial carrier protein 4 94 IPR018108 -
Seca12g03579 297 Pfam Mitochondrial carrier protein 102 200 IPR018108 -
Seca12g03579 297 Pfam Mitochondrial carrier protein 214 296 IPR018108 -
Seca12g03579 297 SUPERFAMILY Mitochondrial carrier 3 290 IPR023395 -
Seca12g03579 297 ProSiteProfiles Solute carrier (Solcar) repeat profile. 2 93 IPR018108 -
Seca12g03579 297 Gene3D Mitochondrial carrier domain 2 296 IPR023395 -
Seca12g03579 297 ProSiteProfiles Solute carrier (Solcar) repeat profile. 102 198 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03579 Seca-Chr12 83917578 83918895 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03579 22 296 Antiporters AT1G79900 33.452 1.30e-41 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03579 K15109 - gmx:100791908 548.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g03579 12 83917578 83918895 Seca12g03579 12 83917578 83918895 ECH