Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03578 ATGGCTTCTTCAATGAGGATCTCAAGGCTCATCTCTCGCTCATTTTCTTCTTCTACCTCCTTGTTTTCTCGAGGTGGGAATGGTTACCTGGGTGGCAGACTCAGTAAATACAGCACTGCTGCTGCCATTGAACAAGAACCCATTAAACCATCAGTGCAAGTAGAGCATACCCAGCTCTTAATTGATGGGAAATTCGTAGATGTTGCTTCTGGGAAAACTTTTCCAACGTTGGACCCTAGGACAGGGGAAGTGATTGCTCATGTTGCTGAGGGTCACGCTGAAGATGTTGATCGTGCAGTTGCAGCTGCACGCAAAGCATTCGATCAAGGACCATGGCCTAAGATGCCAGCCTATGAAAGGCAAAGGATATTGTTGCGGGCTGCTGATCTATTGGAAAAGCATAATGATGAGCTTGCAGCACTTGAGACTTGGGATAATGGGAAGCCATATGAACAATCTGCTCAGATTGAAATTCCAATGCTGGTTCGCCTATTTCGTTACTATGCTGGTTGGGCAGATAAGATTCATGGTCTCACAGTTCCAGCTGATGGACCACACCATGTGCAAACACTGCATGAACCCATTGGTGTTGCTGGTCAGATCATTCCATGGAACTTCCCTCTTCTCATGTTTGTTTGGAAGGTGGGACCTGCTTTGGCCTGTGGCAACTCTATTGTTCTGAAAACAGCTGAGCAGACACCATTATCTGCTTTATATGCAGCAAAACTACTTCATGAGGCTGGACTTCCTCCTGGTGTTTTGAATATAGTATCTGGCTTTGGTCCAACTGCTGGTGTTGCACTTGCTAGTCACATGGATGTTGATAAGGTACTAACATGTTTTGTTATGCATTGGTGTGTTAATGTAATGGAACTGGCGGCTAAAAGCAATCTTAAGCCTGTAACTTTGGAGCTTGGTGGGAAATCCCCCTTTATTGTATGTGAAGATGCTGATGTTGATCAGGCTGTTGAGCTAGCACACTTTGCCTTATTCTTTAATCAGGGACCATGTTGCTGTGCTGGGTCTCGAACATTTGTACATGAACGTGTATATGATGAGTTTGTTGAGAAAGCAAAGGCTAGAGCTTTAAAACGTATTGTTGGTGATCCATTCAAGGCAGGAATAGAGCAATGTCCTCAGATTGATTCAGATCAATTTGAGAAAATACTGAGGTATATCAAATCTGGTGTTCAAAATGGGGCTACCCTTGAAACTGGAGGAGATAGGCTTGGCAGCAAAGGGTTCTATATTCAGCCTACTGTCTTCTCAAATGTCCAGGATAACATGTTGATTGCAAAGGAAGAGATCTTTGGTCCAATGCAATCCATATTAAAATTCAAGTGA 1344 0.4375 MASSMRISRLISRSFSSSTSLFSRGGNGYLGGRLSKYSTAAAIEQEPIKPSVQVEHTQLLIDGKFVDVASGKTFPTLDPRTGEVIAHVAEGHAEDVDRAVAAARKAFDQGPWPKMPAYERQRILLRAADLLEKHNDELAALETWDNGKPYEQSAQIEIPMLVRLFRYYAGWADKIHGLTVPADGPHHVQTLHEPIGVAGQIIPWNFPLLMFVWKVGPALACGNSIVLKTAEQTPLSALYAAKLLHEAGLPPGVLNIVSGFGPTAGVALASHMDVDKVLTCFVMHWCVNVMELAAKSNLKPVTLELGGKSPFIVCEDADVDQAVELAHFALFFNQGPCCCAGSRTFVHERVYDEFVEKAKARALKRIVGDPFKAGIEQCPQIDSDQFEKILRYIKSGVQNGATLETGGDRLGSKGFYIQPTVFSNVQDNMLIAKEEIFGPMQSILKFK. 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03578 447 SUPERFAMILY ALDH-like 52 447 IPR016161 GO:0016491
Seca12g03578 447 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 42 306 IPR016162 GO:0016491
Seca12g03578 447 FunFam ALD5p Mitochondrial aldehyde dehydrogenase 61 316 - -
Seca12g03578 447 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 307 447 IPR016163 GO:0016620
Seca12g03578 447 FunFam Mitochondrial aldehyde dehydrogenase 2 309 447 - -
Seca12g03578 447 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 303 310 IPR029510 GO:0016491
Seca12g03578 447 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 41 447 - -
Seca12g03578 447 Pfam Aldehyde dehydrogenase family 67 447 IPR015590 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03578 Seca-Chr12 83892880 83896786 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03578 3 446 Aldehyde Dehydrogenase Gene Family AT3G48000 74.888 0.0 704
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03578 K00128 - gmx:100777399 764.607