Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca12g03568 | ATGTCTCCACCACTGCTGGTTACTGAAGAGGAAGGGCAGAGCAAAGCCTCAACAATAGCATCTGCATCTTCACAATCCCTGGATTGCTTCTCCCAAACTGGGGCTGGACTGAAAGAGCGCAATTACCTGGGATTGTCGGATTGCTCATCGGTGGACAGTTCTACTGTCCCAAACTTGTCTGATGAGAAAAAGGAAAACCTAAATTTGAAGGCTACAGAGTTGAGGCTGGGCCTTCCTGGGTCCCAGTCACCTGAAAGGGATCCAGATCTTTTCTCATTGAGCTCAACAAAACTTGATGAGAAACCACTGTTCCCTTTGCTTCCTACAAAAGATGGAATCTGCTCATTGTCCCAGAAAACTGTGGTTTCAGGCAACAAAAGAGGTTTTGCCGATGCAATGGATGGGTTCCCTGAGGGGAAATTTCCTGGTAATGCAGGGATAAACATAATGCTATCACCTAGACCTTCAGGAGCTCCTTCAACCACAATTAAAGAAATACCAAGCAAGGTGTTACAAGAACGTCCTTGTGCAGCAAATGGAACTGGTCATAACCATACAGGGGCTTCTATCAGTGGCAGTGCACCGGCTTCTAAGGCACAAGTTGTTGGTTGGCCTCCTATAAGATCATTTAGAAAAAACTCATTGGCCACCACTTCAAAGAACAATGATGAAGTAGATGGAAAACCAGGTCCAGCCGCACTCTTTGTGAAGGTCAGCATGGATGGTGCTCCCTATCTCAGGAAGGTAGATCTAAGAAATTATACAACATACCAGGAACTGTCTTCTGACCTTGAGAAGATGTTCAGCTGTTTTACCCTAGGTCAATGTGGTTCCCATGGAGCTCCGGGAAGAGAAATGTTGAGTGAGAGCAAGCTGAAGGACTTCCTGCATGGTTCAGAATATGTGCTCACTTATGAAGATAAAGATGGTGACTGGATGCTTGTAGGAGATGTACCATGGGATATGTTCATTGACACATGCAAAAGGCTGAAAATCATGAAGGGTTCTGATGCCATTGGCTTAGACAAGGGAACTATTATTACTAAAGCCTGGGGTTGA | 1059 | 0.4523 | MSPPLLVTEEEGQSKASTIASASSQSLDCFSQTGAGLKERNYLGLSDCSSVDSSTVPNLSDEKKENLNLKATELRLGLPGSQSPERDPDLFSLSSTKLDEKPLFPLLPTKDGICSLSQKTVVSGNKRGFADAMDGFPEGKFPGNAGINIMLSPRPSGAPSTTIKEIPSKVLQERPCAANGTGHNHTGASISGSAPASKAQVVGWPPIRSFRKNSLATTSKNNDEVDGKPGPAALFVKVSMDGAPYLRKVDLRNYTTYQELSSDLEKMFSCFTLGQCGSHGAPGREMLSESKLKDFLHGSEYVLTYEDKDGDWMLVGDVPWDMFIDTCKRLKIMKGSDAIGLDKGTIITKAWG. | 353 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca12g03568 | 352 | MobiDBLite | consensus disorder prediction | 182 | 196 | - | - | |
Seca12g03568 | 352 | FunFam | Auxin-responsive protein | 228 | 345 | - | - | |
Seca12g03568 | 352 | SUPERFAMILY | CAD & PB1 domains | 231 | 334 | - | - | |
Seca12g03568 | 352 | Pfam | AUX/IAA family | 72 | 341 | IPR033389 | - | |
Seca12g03568 | 352 | Gene3D | - | 230 | 347 | - | - | |
Seca12g03568 | 352 | ProSiteProfiles | PB1 domain profile. | 233 | 337 | IPR000270 | GO:0005515 | |
Seca12g03568 | 352 | MobiDBLite | consensus disorder prediction | 177 | 196 | - | - | |
Seca12g03568 | 352 | PANTHER | AUXIN-RESPONSIVE PROTEIN IAA17 | 67 | 340 | IPR003311 | GO:0005634|GO:0006355 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca12g03568 | Seca-Chr12 | 83531207 | 83537007 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca12g03568 | 236 | 347 | B3 DNA Binding Superfamily | AT2G46530 | 34.167 | 3.94e-09 | 56.2 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | AUX/IAA | Seca12g03568 | AUX_IAA | 3.6e-86 | CL0072 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca12g03568 | K14484 | - | gmx:100500373 | 605.905 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Seca12g03568 | 12 | 83531207 | 83537007 | Seca12g03568 | 12 | 83531207 | 83537007 | ECH | |
Seca12g03568 | 12 | 83531207 | 83537007 | Seca12g03568 | 12 | 83531207 | 83537007 | PCT |