Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03568 ATGTCTCCACCACTGCTGGTTACTGAAGAGGAAGGGCAGAGCAAAGCCTCAACAATAGCATCTGCATCTTCACAATCCCTGGATTGCTTCTCCCAAACTGGGGCTGGACTGAAAGAGCGCAATTACCTGGGATTGTCGGATTGCTCATCGGTGGACAGTTCTACTGTCCCAAACTTGTCTGATGAGAAAAAGGAAAACCTAAATTTGAAGGCTACAGAGTTGAGGCTGGGCCTTCCTGGGTCCCAGTCACCTGAAAGGGATCCAGATCTTTTCTCATTGAGCTCAACAAAACTTGATGAGAAACCACTGTTCCCTTTGCTTCCTACAAAAGATGGAATCTGCTCATTGTCCCAGAAAACTGTGGTTTCAGGCAACAAAAGAGGTTTTGCCGATGCAATGGATGGGTTCCCTGAGGGGAAATTTCCTGGTAATGCAGGGATAAACATAATGCTATCACCTAGACCTTCAGGAGCTCCTTCAACCACAATTAAAGAAATACCAAGCAAGGTGTTACAAGAACGTCCTTGTGCAGCAAATGGAACTGGTCATAACCATACAGGGGCTTCTATCAGTGGCAGTGCACCGGCTTCTAAGGCACAAGTTGTTGGTTGGCCTCCTATAAGATCATTTAGAAAAAACTCATTGGCCACCACTTCAAAGAACAATGATGAAGTAGATGGAAAACCAGGTCCAGCCGCACTCTTTGTGAAGGTCAGCATGGATGGTGCTCCCTATCTCAGGAAGGTAGATCTAAGAAATTATACAACATACCAGGAACTGTCTTCTGACCTTGAGAAGATGTTCAGCTGTTTTACCCTAGGTCAATGTGGTTCCCATGGAGCTCCGGGAAGAGAAATGTTGAGTGAGAGCAAGCTGAAGGACTTCCTGCATGGTTCAGAATATGTGCTCACTTATGAAGATAAAGATGGTGACTGGATGCTTGTAGGAGATGTACCATGGGATATGTTCATTGACACATGCAAAAGGCTGAAAATCATGAAGGGTTCTGATGCCATTGGCTTAGACAAGGGAACTATTATTACTAAAGCCTGGGGTTGA 1059 0.4523 MSPPLLVTEEEGQSKASTIASASSQSLDCFSQTGAGLKERNYLGLSDCSSVDSSTVPNLSDEKKENLNLKATELRLGLPGSQSPERDPDLFSLSSTKLDEKPLFPLLPTKDGICSLSQKTVVSGNKRGFADAMDGFPEGKFPGNAGINIMLSPRPSGAPSTTIKEIPSKVLQERPCAANGTGHNHTGASISGSAPASKAQVVGWPPIRSFRKNSLATTSKNNDEVDGKPGPAALFVKVSMDGAPYLRKVDLRNYTTYQELSSDLEKMFSCFTLGQCGSHGAPGREMLSESKLKDFLHGSEYVLTYEDKDGDWMLVGDVPWDMFIDTCKRLKIMKGSDAIGLDKGTIITKAWG. 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03568 352 MobiDBLite consensus disorder prediction 182 196 - -
Seca12g03568 352 FunFam Auxin-responsive protein 228 345 - -
Seca12g03568 352 SUPERFAMILY CAD & PB1 domains 231 334 - -
Seca12g03568 352 Pfam AUX/IAA family 72 341 IPR033389 -
Seca12g03568 352 Gene3D - 230 347 - -
Seca12g03568 352 ProSiteProfiles PB1 domain profile. 233 337 IPR000270 GO:0005515
Seca12g03568 352 MobiDBLite consensus disorder prediction 177 196 - -
Seca12g03568 352 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 67 340 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03568 Seca-Chr12 83531207 83537007 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03568 236 347 B3 DNA Binding Superfamily AT2G46530 34.167 3.94e-09 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Seca12g03568 AUX_IAA 3.6e-86 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g03568 12 83531207 83537007 Seca12g03568 12 83531207 83537007 ECH
Seca12g03568 12 83531207 83537007 Seca12g03568 12 83531207 83537007 PCT