Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03566 ATGGAGCTTTCTCATCTTGGTTTCCTTGAGGAGTTAGTAGTTCCAAGAAGAGACATATGGAATGCTTCTTCCACTGGGTTTAGTGAGTTATTGCTTAGTGGTTGGAGCTTTGATTCTATTGTGGAGAACCCAGCTTTGGCTACTTCAAACTCCTCATTTGCTTCATTTTCAACACCATTAGACCATAGATTTGAGTGTCCTTACAACAGTGCAGCAACATACCATTTTTCTGATGGGTTCACAATGCCAGAGCTTGACTCATCACATACAAGGAATGATGACCCAGCACCCCTTCCAAAGCAGGAACATAACCCATCAGTGGAGAATGAAGAGATTGGTTTTCTAGGCAGTGGTGACAAGAGCTTGGAGGAAACAAAGTGTGGCTGCAAAATTGAGGAGCAGAGTACTGAGATTCCAGTCTTCAACATGGGGGTGTGTGATGGAGAGAAAAAATCAAAGTCCAAGAAGCTAGAAGGGCAGCCCTCAAAGAATCTCATGGCAGAAAGAAGGAGAAGAAAGCGTTTGAATGACCGTATTTCTATGCTGAGGTCAATAGTCCCCAAGATCAGCAAGATGGACAGGACCTCTATTCTTGGAGATACCATAGATTACATGAAAGAGCTTTTGGAAAGGATTGGTAAGTTGCATGAAGGAGAAGGGGAAGAGGAGACAAGTCAGATAAATCTCTTGGACATTTCCAAGGAACTCAAGAAGCCAAATGAAGTAATAGTAAGAAATTCCCCCAAGTTTAATGTTGAGAGGAGAGACCAGGACATGAGGATCAGCATCTGCTGTGCCACATGGCCAGGATTGTTACTATCAACAATAAATACACTAGAAGCATTAGGCCTTGAGATTCAGCAATGTGTTATAAGTAGTTTCAATGACTTTTCAATGGAAGTATCATGTTCAGAGGTAGCTGAACAAAGAAACTGCATTAGCTCTGAAGAGATAAAGCAAGCACTATTCAGAAATGCAGGGTTTAGTGGGATATGTCTCTAG 1002 0.4202 MELSHLGFLEELVVPRRDIWNASSTGFSELLLSGWSFDSIVENPALATSNSSFASFSTPLDHRFECPYNSAATYHFSDGFTMPELDSSHTRNDDPAPLPKQEHNPSVENEEIGFLGSGDKSLEETKCGCKIEEQSTEIPVFNMGVCDGEKKSKSKKLEGQPSKNLMAERRRRKRLNDRISMLRSIVPKISKMDRTSILGDTIDYMKELLERIGKLHEGEGEEETSQINLLDISKELKKPNEVIVRNSPKFNVERRDQDMRISICCATWPGLLLSTINTLEALGLEIQQCVISSFNDFSMEVSCSEVAEQRNCISSEEIKQALFRNAGFSGICL. 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03566 333 SMART finulus 165 214 IPR011598 GO:0046983
Seca12g03566 333 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 162 219 IPR036638 GO:0046983
Seca12g03566 333 Pfam Helix-loop-helix DNA-binding domain 165 208 IPR011598 GO:0046983
Seca12g03566 333 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 159 208 IPR011598 GO:0046983
Seca12g03566 333 Gene3D - 147 209 IPR036638 GO:0046983
Seca12g03566 333 MobiDBLite consensus disorder prediction 85 119 - -
Seca12g03566 333 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 79 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03566 Seca-Chr12 83275364 83277848 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03566 143 333 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 61.458 1.93e-68 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca12g03566 HLH 4.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03566 - - gmx:100806571 494.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g03566 12 83275364 83277848 Seca12g03566 12 83275364 83277848 PCT