Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca12g03553 | ATGGCTGCCAGTTTCTGCTACTCATATATCCTTCCACTCTTCTCGTACTTCCTTTTCTTTACTTTTTCCCCTGTTAATTCAATTCACTTCCAAATTCCCCATTTTAATCCTGGTGATGCTAACATACTCTACCTAGGATCTGCAGCAGCTCGTGAAGGAAGAGTTGAATTTAACATCAATAACGCGTATACGTGTCAAGTTGGAAGGGCCATCTATGCCAAAAGGGTGTTACTTTGGGACTCAGATACAGGTCAACTCACTGACTTCACAACTCATTACACTTTCATCATTGACACTCAAGCTCAACCCCTTTATGGCCATGGACTTGCCTTCTTCCTTGCTCCTGTTGGATTTGAAATTCCACCCAATTCTGCTGGTGGCTTTCTTGGCCTATTCAACACCACAACTATGCATTCAGATGACAACCAAATTGTTCACGTGGAGTTCGATTCTTTCCCAAATCCTGAATTTGATGAAACGGTGCAGCATGTGGGAATCAACAATAACTCAATTTCTTCATCAGTATGGACACGTTGGAATGCTAGTCTACACAGTAGAGACACTGCTGAGGTATGGATTCGCTACAATTCTTCAACCAAGAATTTAAGCGTGTCTTGGAATTACCAAAGCACCTTTGATTTGATGAAGGTCCTCCCTGAATGGGTTACAGTAGGATTTTCTGCTGCAACTGGTAAGAATGGAGAAATCCATAATCTTCTGTCCTGGGAATTCAACTCCACTTTGGACAAAAGTGAAAATAATACAAATAACACAAGATCAGTTGTTATTTTAACTGTCTGTTGCGGTGTTCTGGTGGTGGTAGCAATTGCAGTATATGCGTTACTTTGGAGGAAGAGAAAGAAGAAAAGCAAAAATGAAGAGACTATGCATTTAGCCTCAATTAACGATGACCTGGAAAGAGGAGCCGGGCCAAGAAGGTTCTCCTACAGAGAGCTTGCTTTGGTTACCAATAACTTCTCCAGGGACAGGAAGTTGGGTCAAGGTGGGTTTGGAGCTGTTTACAGAGGTTACTTTGCTGATTCAGATTTAACAGTTGCTGTGAAAAGAATTTCAAAGGGTTCTAGACAAGGGAAAAAAGAGTATGTAACAGAGGTTAAAGTCATTAGCCAACTGAGACATAGGAATCTTGTGAAACTCTTAGGATGGTGCCATGACAGAGGTGAGTTTTTGCTTATTTATGAGTTCATGCCAAATGGAAGCCTTGATTCTCATTTATTTGGTAAAAGGACAACACCTGTCCCTTGGAGTGTAAGGCACAAGATAGCTCTTGGATTGGCCTCTGCAGTGCTTTATCTACATGAAGAATGGGAAAGATGTGTGGTGCATAGGGATATCAAATCAAGCAATGTTATGCTGGATTCTAGTTTCAATGTCAAGCTTGGGGATTTTGGGCTGGCTAAGCTCATGGACCATGAATTAGGGCCTCAAACAACAGGGTTGGCTGGAACCTTGGGGTATTTGGCTCCAGAGTATGTGAGTACAGGCAGGGCTAGCAAAGAGTCAGATGTCTATAGCTTTGGGGTGGTTGCTTTGGAGATTACTACTGGAAAGAAAGCAGTGGATGTTATGGAGGACAAAGATGGAGAGAAGGGATTGATTGAGTGGGTTTGGGATCATCATGGCAGAGGGGAACTGCTTATGGCAATGGATGAGAGTTTGCAGAATGATTTTGATGGGAAACTTGTTGAGTGTTTGATGATTGTGGGACTGTGGTGTTCTCATCCAGATGGAAATCATAGACCAACAATAAGACAAGTAATTCAAGTGCTTAATTTTGAGGTTGATCTGCCAAAGCTTCCATCAAAGAGGCCTGTTGCAACGTATCATCCTCCTACACCGTCCGTAAGCTCGAGAGAAGCTTCCATAACCACTAGCCTTCAAATGGGTCGTTGA | 1914 | 0.4248 | MAASFCYSYILPLFSYFLFFTFSPVNSIHFQIPHFNPGDANILYLGSAAAREGRVEFNINNAYTCQVGRAIYAKRVLLWDSDTGQLTDFTTHYTFIIDTQAQPLYGHGLAFFLAPVGFEIPPNSAGGFLGLFNTTTMHSDDNQIVHVEFDSFPNPEFDETVQHVGINNNSISSSVWTRWNASLHSRDTAEVWIRYNSSTKNLSVSWNYQSTFDLMKVLPEWVTVGFSAATGKNGEIHNLLSWEFNSTLDKSENNTNNTRSVVILTVCCGVLVVVAIAVYALLWRKRKKKSKNEETMHLASINDDLERGAGPRRFSYRELALVTNNFSRDRKLGQGGFGAVYRGYFADSDLTVAVKRISKGSRQGKKEYVTEVKVISQLRHRNLVKLLGWCHDRGEFLLIYEFMPNGSLDSHLFGKRTTPVPWSVRHKIALGLASAVLYLHEEWERCVVHRDIKSSNVMLDSSFNVKLGDFGLAKLMDHELGPQTTGLAGTLGYLAPEYVSTGRASKESDVYSFGVVALEITTGKKAVDVMEDKDGEKGLIEWVWDHHGRGELLMAMDESLQNDFDGKLVECLMIVGLWCSHPDGNHRPTIRQVIQVLNFEVDLPKLPSKRPVATYHPPTPSVSSREASITTSLQMGR. | 638 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca12g03553 | 637 | SUPERFAMILY | Protein kinase-like (PK-like) | 310 | 612 | IPR011009 | - | |
| Seca12g03553 | 637 | FunFam | Lectin-domain containing receptor kinase A4.3 | 403 | 617 | - | - | |
| Seca12g03553 | 637 | PANTHER | - | 60 | 599 | - | - | |
| Seca12g03553 | 637 | Gene3D | Transferase(Phosphotransferase) domain 1 | 403 | 618 | - | - | |
| Seca12g03553 | 637 | CDD | STKc_IRAK | 332 | 598 | - | - | |
| Seca12g03553 | 637 | Pfam | Legume lectin domain | 28 | 256 | IPR001220 | GO:0030246 | |
| Seca12g03553 | 637 | SMART | serkin_6 | 326 | 597 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Seca12g03553 | 637 | CDD | lectin_legume_LecRK_Arcelin_ConA | 28 | 248 | IPR001220 | GO:0030246 | |
| Seca12g03553 | 637 | ProSitePatterns | Protein kinases ATP-binding region signature. | 332 | 355 | IPR017441 | GO:0005524 | |
| Seca12g03553 | 637 | Pfam | Protein kinase domain | 327 | 595 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Seca12g03553 | 637 | MobiDBLite | consensus disorder prediction | 609 | 637 | - | - | |
| Seca12g03553 | 637 | ProSiteProfiles | Protein kinase domain profile. | 326 | 606 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Seca12g03553 | 637 | Gene3D | Phosphorylase Kinase; domain 1 | 311 | 402 | - | - | |
| Seca12g03553 | 637 | SUPERFAMILY | Concanavalin A-like lectins/glucanases | 26 | 253 | IPR013320 | - | |
| Seca12g03553 | 637 | MobiDBLite | consensus disorder prediction | 617 | 637 | - | - | |
| Seca12g03553 | 637 | FunFam | L-type lectin-domain containing receptor kinase IX.1 | 311 | 402 | - | - | |
| Seca12g03553 | 637 | Gene3D | - | 25 | 270 | - | - | |
| Seca12g03553 | 637 | ProSitePatterns | Legume lectins alpha-chain signature. | 218 | 227 | IPR000985 | - | |
| Seca12g03553 | 637 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 447 | 459 | IPR008271 | GO:0004672|GO:0006468 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca12g03553 | Seca-Chr12 | 82363470 | 82365419 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Seca12g03553 | 13 | 616 | Receptor kinase-like Gene Family | AT5G10530 | 56.800 | 0.0 | 695 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| PK | RLK-Pelle_L-LEC | Seca12g03553 | Pkinase | 2.4e-48 | CL0016 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca12g03553 | - | - | qsu:112006239 | 831.247 |