LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca12g03552	ATGGCTGGCAGTTTCTGCTATTCATATATTCTTCCACTCTTCTTATTGTCCCTCCTTTTCTTAAATTTACCTGTTAATTCAATTCACTTCCAAATTCCCCATTTTAATCCTGGTGATGCCAACATACTCTACCTAGGATCTGCAGCACCAAGTGACGGAGAAGTTGAATTTAACATTAATGAGGCGTATACATCTCAAGTTGGATGGGCCATCTATGCCAAAAGTGTGTTACTTTGGGATTCGGGCACAAGTCAACTCACTGACTTCACAACGCATTTCACTTTCATTATCGACACTCTTGCCCAATCTCGTTATGGCCATGGACTTGCCTTCTTCCTGGCTCCTGTTGGATTTGAAATCCCACCCAATTCTGCTGGTGGCTTTCTGGGCCTATTCAACACCACAACTATGCATTCAGCTGATAACCAAATTGTTCACGTGGAGTTCGATTCTTTCCCAAATCCTGAATTTGATGAAACGGTGGAGCATGTGGGAATCAACAATAACTCAATTTCTTCATCAGTATGGACACGTTGGAATGCTAGTCTACACAGTGGAGACACTGCTGAGGTATGGATTCGCTACAATTCTACAATCAAGAATTTAAGCGTGTCTTGGAATTACCAAAGCACCTCTGTTCCTCAAGAAAATACTAGTATTTCCTATCAAATTGATTTAATGAAGGTCCTCCCTGAATGGGTTACAGTAGGATTTTCAGCTGCTACAGGTTCAGTAAAAGAAAGTCATAATCTTCTGTCATGGGAATTCAACTCCACTTTGGACAAAGTTGGAAATAAAAATAATAATACAAATAAGACAAGATTAGTTGTGATTCTAACTGTCAGTTGCGGGGGTGTTCTAGTGGTGGGAGCAATTTCAGTATATGTGTTACTTTGGAGGAAGAAAGAGAAGGAAAGAAAAAAAGCAGAGGACGATGACCTTGAAAGAGGAGCAGGGCCAAGAAGGTTTTCCTACAGAGAGCTTGCATTGATTACCAATAACTTCTCCCAGGACAGGAAGTTGGGTCAAGGTGGGTTTGGAGCTGTTTATAGAGGTTACTTTGCCGATTTAGATTTAACAGTTGCTGTGAAGAAAATATCAAGGGGATCTAGACAAGGGAAGAAAGAGTATGTAACAGAGGTTAAAGTCATTAGCCAACTGAGACATAGGAATCTTGTGAAACTCTTAGGATGGTGTCATGACAGAGGTGAGTTTCTGCTTGTTTATGAGTTCATGCCAAATGGAAGCCTTGATTCTCATTTATTTGGTAAAAGAACAACACCTCTGCGTTGGAGCGTAAGGCACAAGATAGCTCTTGGATTGGCCTCTGCAGTGCTCTATCTTCATGAAGAATGGGAAAGGTGTGTGGTGCACAGGGATATCAAATCAAGCAATGTTATGCTGGATTCTAGTTTCAATGTCAAGCTTGGTGATTTTGGGTTGGCTAAGCTCATGGACCATGAATTAGGGCCCCAAACAACAGGGTTGGCTGGAACCTTGGGGTATTTGGCTCCAGAGTATGTGAGTACAGGCAGGGCCAGCAAAGAGTCAGATGTCTATAGCTTTGGGGTTGTTGCTTTGGAGATTACTACTGGAAAGAAAGCAGTGGATGTTATGGAGGACAAAGATGGAGAGAAGGGATTGATTGAGTGGGTTTGGGATCATTATGGCAGAGGGGAACTGCTAATGGCAATGGATGAGAGTTTGCAGAATGATTTTGATGGGAAACTTGTTGAGTGTTTGATGATTGTGGGACTGTGGTGTGCACACCCTGATGGAAATCTCAGACCATCAATAAGACAAGCAATTCAAGTGCTTAATTTTGAGGCTGCTCTGCCAAACCTTCCACCAAAGAGGCCTGTTGCAACATACCACGCTCCTACACCATCCGTGAGCTCGAGAGAAGCTTCCATAACCACTAGCCTTCATATTGGTCGTTGA	1941	0.425	MAGSFCYSYILPLFLLSLLFLNLPVNSIHFQIPHFNPGDANILYLGSAAPSDGEVEFNINEAYTSQVGWAIYAKSVLLWDSGTSQLTDFTTHFTFIIDTLAQSRYGHGLAFFLAPVGFEIPPNSAGGFLGLFNTTTMHSADNQIVHVEFDSFPNPEFDETVEHVGINNNSISSSVWTRWNASLHSGDTAEVWIRYNSTIKNLSVSWNYQSTSVPQENTSISYQIDLMKVLPEWVTVGFSAATGSVKESHNLLSWEFNSTLDKVGNKNNNTNKTRLVVILTVSCGGVLVVGAISVYVLLWRKKEKERKKAEDDDLERGAGPRRFSYRELALITNNFSQDRKLGQGGFGAVYRGYFADLDLTVAVKKISRGSRQGKKEYVTEVKVISQLRHRNLVKLLGWCHDRGEFLLVYEFMPNGSLDSHLFGKRTTPLRWSVRHKIALGLASAVLYLHEEWERCVVHRDIKSSNVMLDSSFNVKLGDFGLAKLMDHELGPQTTGLAGTLGYLAPEYVSTGRASKESDVYSFGVVALEITTGKKAVDVMEDKDGEKGLIEWVWDHYGRGELLMAMDESLQNDFDGKLVECLMIVGLWCAHPDGNLRPSIRQAIQVLNFEAALPNLPPKRPVATYHAPTPSVSSREASITTSLHIGR.	647

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca12g03552	646	ProSitePatterns	Protein kinases ATP-binding region signature.	341	365	IPR017441	GO:0005524
	Seca12g03552	646	Gene3D	-	25	283	-	-
	Seca12g03552	646	CDD	STKc_IRAK	341	607	-	-
	Seca12g03552	646	SUPERFAMILY	Protein kinase-like (PK-like)	319	626	IPR011009	-
	Seca12g03552	646	FunFam	L-type lectin-domain containing receptor kinase IX.1	26	269	-	-
	Seca12g03552	646	ProSitePatterns	Legume lectins alpha-chain signature.	230	239	IPR000985	-
	Seca12g03552	646	FunFam	Lectin-domain containing receptor kinase A4.3	412	626	-	-
	Seca12g03552	646	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	456	468	IPR008271	GO:0004672\|GO:0006468
	Seca12g03552	646	Pfam	Protein kinase domain	336	550	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca12g03552	646	SUPERFAMILY	Concanavalin A-like lectins/glucanases	26	261	IPR013320	-
	Seca12g03552	646	Gene3D	Phosphorylase Kinase; domain 1	320	411	-	-
	Seca12g03552	646	Pfam	Legume lectin domain	28	268	IPR001220	GO:0030246
	Seca12g03552	646	CDD	lectin_legume_LecRK_Arcelin_ConA	28	260	IPR001220	GO:0030246
	Seca12g03552	646	FunFam	L-type lectin-domain containing receptor kinase IX.1	320	411	-	-
	Seca12g03552	646	PANTHER	-	58	610	-	-
	Seca12g03552	646	Gene3D	Transferase(Phosphotransferase) domain 1	412	627	-	-
	Seca12g03552	646	SMART	serkin_6	335	611	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca12g03552	646	ProSiteProfiles	Protein kinase domain profile.	335	612	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca12g03552	Seca-Chr12	82246898	82248859	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca12g03552	8	625	Receptor kinase-like Gene Family	AT5G10530	58.637	0.0	730

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Seca12g03552		Pkinase	1.7e-47	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca12g03552	-		-	cave:132172487	864.759