Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03545 CTTCCTATAATTCCTTTAACTGTAATTCAACAGAGTACAAATTTCTTTTCAGAGTCATCTAAATTAGGAGAAGGTGGATTTGGCCCTGTTTACAAGGGTACTTTACCAGATGGAACAGAAATTGTTGTCAAAAGGCTTGCAGAAACGTCTAGTCAAGGTTTAGAGGAGTTCAAGAATGAAGTAATCTTCATAGCTAAACTGCAACACAGAAACCTTGTGAAACTCTTGGATGAGGAAAAGCAAAAGCAACTAGATTGGAAATTACGACTAAGCATTATCAATGGAATTGCAAGAGGACTGTTATACCTTCATGAGGATTCTAGACATAGAGTAATTCATAGAGATATGAAAGCCAACAATGTTCTTCTGGACCATGAAATGAATCCAAAAATATCGGATTTTGGATTGGCAAGGACATTTGAAAGAGGCCAAAATCTGACAAAAACAAAAAGAGTAATTGGCACCTACGGATACATGACTCCAGAATATGCTATGGCAGGGTTATTTTGA 510 0.3667 LPIIPLTVIQQSTNFFSESSKLGEGGFGPVYKGTLPDGTEIVVKRLAETSSQGLEEFKNEVIFIAKLQHRNLVKLLDEEKQKQLDWKLRLSIINGIARGLLYLHEDSRHRVIHRDMKANNVLLDHEMNPKISDFGLARTFERGQNLTKTKRVIGTYGYMTPEYAMAGLF. 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03545 169 FunFam Os07g0541700 protein 67 155 - -
Seca12g03545 169 Pfam Protein tyrosine and serine/threonine kinase 19 76 IPR001245 GO:0004672|GO:0006468
Seca12g03545 169 Gene3D Transferase(Phosphotransferase) domain 1 80 169 - -
Seca12g03545 169 SMART serkin_6 16 169 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g03545 169 ProSiteProfiles Protein kinase domain profile. 16 169 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g03545 169 Pfam Protein kinase domain 89 163 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g03545 169 ProSitePatterns Serine/Threonine protein kinases active-site signature. 111 123 IPR008271 GO:0004672|GO:0006468
Seca12g03545 169 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 2 169 - -
Seca12g03545 169 Gene3D Phosphorylase Kinase; domain 1 2 79 - -
Seca12g03545 169 SUPERFAMILY Protein kinase-like (PK-like) 4 167 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03545 Seca-Chr12 81806516 81807796 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03545 8 169 Receptor kinase-like Gene Family AT4G23130 55.851 1.82e-69 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca12g03545 Pkinase 1.1e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03545 - - mtr:11406796 273.478