Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03538 ATGATCACTATAATTTCCATATTCCTCCTATTGGCTCACAATGTGAAGTCATTTTCCTTCACATTCCCAAGTTTTGCAAACACAAACGGCATTGACCTCCAAGGTGATGCCTTCACCTCAAACGGCGCTATACACCTTACAAGTGCACTCGTACACAACAGTGCTGGCAGAGCCTCTTATGCTTCACCCGTGCACCTTTGGGATGCCAAAACAGGAAAACTCGCAAGCTTCAGCACTATCTTCACCTTTGTTGTTGCACCAAACGGTCCTGGACTCTTTGGAGATGGGATCTCCTTTTTCCTTGCTCCATTTCATTCTAACATCCCTAAAAATTCAAGTGGTGGGTTCCTTGGACTGTTCAATGCTGAAACTGCCTTAAATGCCTACCAAAACCAAATAGTTGCTGTTGAATTTGATTCCTTCGCTGGGAATCCGTGGGATCCTGAGTCTGCTCATATAGGGATTGATGTAAACTCCATTGCTTCAGCAACAACAGCGAAATGGCAAACTGGCGATGTTGTCAACGGGTTTACTGCATTTGCCTTTATAAACTACGAGGCTGAAACCAAAAGTTTGAGTGTGGTTGTAAGGTACCCTGGAAGCCATGTGAATGGGACTACAAGTAGACTCTCATTTGTGATTGACTTGAGGACTGTTCTCCCAGAATGGGTTAGAGTTGGTTTCTCTGGTGCCACTGGACAGCTAGTTGAATTGCATAAGTGCCATGCATTGGCAGAAGTATATTTAGATGCTTCTTGTTTATGTTATAGGTGTGTTGCTTTTGGTTCATCAATAAGTTTACCAGCCCTAATCCCCAATTCCATCTCTTTCATCTCTCGCATCGCCATCGCATGGTCCCGCGGCAACTCCCTACGCGTCTCCCTTTTCGCTGAGCCCTCTGGAAGTCCCGACGCCGAAACGGGGGCCAAAGTCGTCGAAGTTAAGCTCAATGGAGGGGATTCGGAGATCGCTGTTGCTAACTGGCGGCGAATTGCGTACGGCTCTGTGACGCCCTTAGCGCTGCTTCAGAGTCGGTGGAGCTCTCTTTCCGAAAATGGACTCGTGGAGGCAGTTGTTGTTATTATTTCCAAGATGCCTCGCTTGCATCCTAAATTTGCTGTTGGAAAATTAGGAGAATGCTTTAAATCCAAGCCATGCTTTATCAAGGCCTGGGAAAAATGGAGGTCACAAATTACTAAACTGGACAACAGTCCCTTTTGGATTCAGTGTGACAATCAACAAACTCGTGAAGGCTTGAGAAACTTGCTACAAATTATGCTGGATAATGGTATTGGCCTTGGAAATTTGCTGCATGGCTATTTCCCTAATGCATCTCGTTTTCATTGCGGTGGATTTTCCGCTAAAGTGTCACTTCATGGGTGTGGTTTGTCTTGGCTTTTCCTATAG 1407 0.4556 MITIISIFLLLAHNVKSFSFTFPSFANTNGIDLQGDAFTSNGAIHLTSALVHNSAGRASYASPVHLWDAKTGKLASFSTIFTFVVAPNGPGLFGDGISFFLAPFHSNIPKNSSGGFLGLFNAETALNAYQNQIVAVEFDSFAGNPWDPESAHIGIDVNSIASATTAKWQTGDVVNGFTAFAFINYEAETKSLSVVVRYPGSHVNGTTSRLSFVIDLRTVLPEWVRVGFSGATGQLVELHKCHALAEVYLDASCLCYRCVAFGSSISLPALIPNSISFISRIAIAWSRGNSLRVSLFAEPSGSPDAETGAKVVEVKLNGGDSEIAVANWRRIAYGSVTPLALLQSRWSSLSENGLVEAVVVIISKMPRLHPKFAVGKLGECFKSKPCFIKAWEKWRSQITKLDNSPFWIQCDNQQTREGLRNLLQIMLDNGIGLGNLLHGYFPNASRFHCGGFSAKVSLHGCGLSWLFL. 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03538 468 ProSitePatterns Legume lectins beta-chain signature. 134 140 IPR019825 -
Seca12g03538 468 PANTHER CONCANAVALIN A-LIKE LECTIN FAMILY PROTEIN 5 243 - -
Seca12g03538 468 Pfam Nup85 Nucleoporin 348 427 IPR011502 -
Seca12g03538 468 ProSitePatterns Legume lectins alpha-chain signature. 220 229 IPR000985 -
Seca12g03538 468 Pfam Legume lectin domain 18 241 IPR001220 GO:0030246
Seca12g03538 468 SUPERFAMILY Concanavalin A-like lectins/glucanases 16 241 IPR013320 -
Seca12g03538 468 CDD lectin_legume_LecRK_Arcelin_ConA 18 239 IPR001220 GO:0030246
Seca12g03538 468 Gene3D - 15 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03538 Seca-Chr12 81615779 81621717 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03538 8 237 Receptor kinase-like Gene Family AT5G10530 37.872 2.49e-31 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03538 - - aprc:113871629 352.443
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g03538 12 81615779 81621717 Seca12g03537 12 81475974 81477680 PCT
Seca12g03538 12 81615779 81621717 Seca12g03538 12 81615779 81621717 PCT