Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03537 ATGAGAGCCGTTGATCAAACCCAAGTTGGTGATGGGTTATCCTTCTTCATTGCACCATTTCAATCTGAAATCCCAACCAATTCAACTGGTGGGTACCTTGGTCTTTTAAGCAAGGAAGATGCATTCAACACTAGCAAAAATCAAATAGTTGCAGTTGAGTTTGATAGTTTTAAGAACGATTGGGATCCAAGCTCTGATCATGTAGGAATCAATGTTAACTCCATCCAATCAGTTACAAATGTGACATGGAAGAGTAACATTAAGAATGGGTCAATTGCTAATGCTTGGATTTCATATAACTCTACCACAAAAAATCTTTCTGTTTACCTTACTTATGCCAATAATCCAAGCTTTGATGGTGATTCTAGTCTTTGGCATGTAATTGATTTGAGGGATGTTTTGCCAGAAACTGTTAGAATTGGATTTTCTGCTGCCACAGGTCAATGGATTGAAATACACAATATTCTATCTTGGTCATTCAATTCAACCTTGGACAACAATGGTGATGGGAAAAACAAGGTTGGTTTAGGCGTTGGTTTAAGTGTTGGTTTTGGTTCTTTAACTTGTGTAGGCCTGCTATGGTTCACCTTATGGAGAAAAAGAAAAGGGCCTAATGGGGGAGAAGAGGACAATACAGGTTTTGATGCTTCTATGGATGATGAATTTGAGAGAGGAACTGGTCCAAAAAGGTTCACTTACAGGGAACTAAGCAATGCAACAAACAGCTTTGCAGAAGCAGGAAAGCTTGGAGAAGGAGGTTTTCTTGGTAACCCCAACCATGAAATTGCAGTAAAAAGGATTTCAAAAGGATCTAAACAAGGAAAAAAGGAATACATATCAGAGGTGAGAATAATTAGCCGTTTGAGACATAGAAATTTGGTTCAACTCATAGGGTGGTGCCATGAGCAAGGTGAGCTACTTCTTGTTTATGAATATATGCCTAATGGAAGCCTTGATTCCCATCTATTTGGAAATGGGGTGATGCTTACTTGGATAGTGAGGTACAAAGTAGCCTTAGGTTTGGCATCTTCTCTTCTTTATCTTCATGAAGAGTGGGAACAATGTGTGGTGCATAGAGATATTAAGTCAAGTAATGTCATGTTGGATGCAAATTTCAATGCCAAGCTTGGTGATTTTGGTCTTGCAAGGCTGGTTGACCATGAACTTGGCTCTCAAACTACTGTTTTGGCAGGCACAATGGGGTACCTAGCACCAGAGTGTGTGACCACAGGGAAATCTAGTAAGGAATCTGATGTTTATAGCTTTGGTGTTGTTGCACTTGAAATCACATGTGGTAGGAGACCAGTTGAAGTGAAACAAGAGCCTGGTAAAGTTAGGCTTGTAGAGTGGGTGTGGGATCTCTATGGAAAAGGGAAACTTGCTGAAGCAGCTGATGAGAGGTTATGTTTGGAATTTGATGAGAAGCAAATGGAATGCTTGATGGTAGTTGGGTTGTGGTGTTGTCATCCTGATCATACAATGAGGCCATCTATTAGGCAAGTGATAAATGTCCTTAATTTTGAAGCTCCTTTGCCTAGTCTTCCAGCAAAGTTGCCTGTGCCAATGTACTTTGCACCTCCCATGGAGATGTGCAAATTCTCCTACAATACATCTGGCCTCACAACCACAACCAAAGGATCTTCTTACTCATCAATGTCAGCAGGGTCTAGAAAATCTCTATTATAG 1686 0.4027 MRAVDQTQVGDGLSFFIAPFQSEIPTNSTGGYLGLLSKEDAFNTSKNQIVAVEFDSFKNDWDPSSDHVGINVNSIQSVTNVTWKSNIKNGSIANAWISYNSTTKNLSVYLTYANNPSFDGDSSLWHVIDLRDVLPETVRIGFSAATGQWIEIHNILSWSFNSTLDNNGDGKNKVGLGVGLSVGFGSLTCVGLLWFTLWRKRKGPNGGEEDNTGFDASMDDEFERGTGPKRFTYRELSNATNSFAEAGKLGEGGFLGNPNHEIAVKRISKGSKQGKKEYISEVRIISRLRHRNLVQLIGWCHEQGELLLVYEYMPNGSLDSHLFGNGVMLTWIVRYKVALGLASSLLYLHEEWEQCVVHRDIKSSNVMLDANFNAKLGDFGLARLVDHELGSQTTVLAGTMGYLAPECVTTGKSSKESDVYSFGVVALEITCGRRPVEVKQEPGKVRLVEWVWDLYGKGKLAEAADERLCLEFDEKQMECLMVVGLWCCHPDHTMRPSIRQVINVLNFEAPLPSLPAKLPVPMYFAPPMEMCKFSYNTSGLTTTTKGSSYSSMSAGSRKSLL. 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03537 561 FunFam Lectin-domain containing receptor kinase A4.3 313 525 - -
Seca12g03537 561 ProSitePatterns Serine/Threonine protein kinases active-site signature. 356 368 IPR008271 GO:0004672|GO:0006468
Seca12g03537 561 Gene3D - 2 175 - -
Seca12g03537 561 Gene3D Transferase(Phosphotransferase) domain 1 313 526 - -
Seca12g03537 561 PANTHER - 9 515 - -
Seca12g03537 561 Pfam Legume lectin domain 6 167 IPR001220 GO:0030246
Seca12g03537 561 SUPERFAMILY Concanavalin A-like lectins/glucanases 6 164 IPR013320 -
Seca12g03537 561 ProSitePatterns Legume lectins beta-chain signature. 50 56 IPR019825 -
Seca12g03537 561 Gene3D Phosphorylase Kinase; domain 1 228 312 - -
Seca12g03537 561 ProSiteProfiles Protein kinase domain profile. 216 514 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g03537 561 CDD STKc_IRAK 249 506 - -
Seca12g03537 561 CDD lectin_legume_LecRK_Arcelin_ConA 1 164 IPR001220 GO:0030246
Seca12g03537 561 SUPERFAMILY Protein kinase-like (PK-like) 227 531 IPR011009 -
Seca12g03537 561 Pfam Protein kinase domain 259 503 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g03537 561 SMART serkin_6 243 505 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03537 Seca-Chr12 81475974 81477680 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03537 2 523 Receptor kinase-like Gene Family AT5G10530 53.663 0.0 546
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Seca12g03537 Pkinase 4.1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03537 - - gmx:100777201 926.006
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g03538 12 81615779 81621717 Seca12g03537 12 81475974 81477680 PCT
Seca12g03537 12 81475974 81477680 Seca12g03537 12 81475974 81477680 PCT