Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03536 ATGAAGATGAAGTGCAAACGTGTTTGCTTCCTTTGGTGGTTTGGAATGACTGTTCAGCTCTGTTTCTTGCTCGGTGCCTGTTCTGAGAAGACATCATTCAGAAGAGTTTTAAGGGAAACCAACAGCTTGGAATTAACGCCTTCTCAATTTGAAGTCAAGTTGAATACAGAAAACGATGAACAGTTGGTGGTTGACAATGGCATTGTTTCCGTCACTTTGTCAAGTCCTGAGGGCTATGTCCTTGCAATGTCTTATAATGGAATTGACAACATACTTGAAGCTGAGAATGAAGAAGAAGATAGAGGTTACTTCGACGTTGTTTGGAATGAACCAGGAAAACCCAGCAACTTTCAGAGAATCCACGGGACAAATTTTTCAGTTGTAGCAGCTGACGAGAATCAGGTGGAGATTTCATTTTTAAGAACATGGACATCTTCCATGAATGGCTCAAGTGTCCCCATAAACATAGATATAAGATACATTTTTCGAAGTGGTGATTCGGGATTCTATTCATACGTAATATTCGATCGCCCTGAAGGATTGCCAGCAGTGGAAGTTGATCAAATTAGGACTGTTTTCAAACTCAACAAAGACAGATTCCACTATATGGCTATATCAGATAACAGGCAAAGAAGCATGCCAACAATGAGAGACAGAGAAACGGGTCAAGCCCTGGCTTACCCCGAAGCAGTTCTTTTAACCAGACCAACTAACCCAGATTTTAGAGGAGAGGTGGATGACAAATACCAGTACTCATGTGAGAACACAGACAATACTGTTCATGGATGGATTAGTCTTGATTCTGATGCACCCGTGGGTTTCTGGATGATAACACCCAGTAACGAATTCCGAAATGCTGGACCCATCAAGCAAGACCTTACTTCTCATGTTGGCCCCATCACCCTCTCTATGTTTGTGAGCACCCACTATGCTGGGAAGGAGGTAACCATGGCATTTCAAGAAGGGGAAACTTATAAAAAGGTTTTTGGCCCTGTATTTGTCTATGTTAACTCTGCTTCAAGCGATAATGATACACTATCCCTATGGTCAGATGCTGTGCAGCAGCTATCCAATGAAGTCAAAAGCTGGCCTTACGATTTTCCTCAATCAGAAGATTACTTTCCACCCAATCAAAGGGGAACTGTATTAGGAAGATTACTAGTCCAAGATCGACACATCAAAGGAGGGAGATTTCAATATCCTAACAATGCTTATATTGGTCTAGCTTTGCCTGGAGAAGCAGGATCATGGCAGAAAGAAAGCAAGGTATATTTATTTGGTGTTGGAGCCAGTGAGAGAATTATTTGGTTTCTTGAACTTTTGGATTCTGAGGCAGCTAAAAATTGA 1347 0.4157 MKMKCKRVCFLWWFGMTVQLCFLLGACSEKTSFRRVLRETNSLELTPSQFEVKLNTENDEQLVVDNGIVSVTLSSPEGYVLAMSYNGIDNILEAENEEEDRGYFDVVWNEPGKPSNFQRIHGTNFSVVAADENQVEISFLRTWTSSMNGSSVPINIDIRYIFRSGDSGFYSYVIFDRPEGLPAVEVDQIRTVFKLNKDRFHYMAISDNRQRSMPTMRDRETGQALAYPEAVLLTRPTNPDFRGEVDDKYQYSCENTDNTVHGWISLDSDAPVGFWMITPSNEFRNAGPIKQDLTSHVGPITLSMFVSTHYAGKEVTMAFQEGETYKKVFGPVFVYVNSASSDNDTLSLWSDAVQQLSNEVKSWPYDFPQSEDYFPPNQRGTVLGRLLVQDRHIKGGRFQYPNNAYIGLALPGEAGSWQKESKVYLFGVGASERIIWFLELLDSEAAKN. 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03536 448 Gene3D - 54 356 IPR014718 GO:0030246
Seca12g03536 448 Pfam Rhamnogalacturonate lyase family 49 245 IPR010325 -
Seca12g03536 448 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 53 432 - -
Seca12g03536 448 CDD RGL4_N 55 345 - -
Seca12g03536 448 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 27 - -
Seca12g03536 448 SUPERFAMILY Galactose mutarotase-like 56 343 IPR011013 GO:0003824|GO:0005975|GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03536 Seca-Chr12 81385461 81391992 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03536 38 439 Polysaccharide Lyase AT2G22620 57.002 7.77e-159 456
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03536 K18195 - gmx:100776664 697.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g03536 12 81385461 81391992 Seca12g03536 12 81385461 81391992 PCT