Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03535 ATGACAACGAATATTAATAATGACATTTTGCACATTTGTTCTGGAATCATGAAATGCATCCAATTTTGCAGGTTTATATTACGTAGAGGCAGTTCAGGATTTTACATGTATGCTATAGTTGAGCGTTCCGAAGGTTTTCCTGCACTTGAGATTGATCACATTAGGATGGTTTTCAAGCTCCAGATGGACAGGTTCCACTATATGGCTATAGCAGAAGATAGACAGCGAGTGATGCCAACGCCAGAAGATAGATCTACTGGGCAACGCCTTGATTATGATGAAGCTGTTTTAATAACCCAACCTAGTAACCCAGAACTTCAAGGAGAGGTGGATGACAAATACCAATACTCTATTGAGAACAAAGATAACAATCTTCATGGTTGGATTAACTTGGACTCCAACTCCAATGAATCTGTGGGCTTCTGGATGATAACACCAAGTAGCGAATTTCGTAACGGTGGGCCAACCCACCAAGCCCTTACTTCTCATGTTGGTCCTGTCACTCTCAATACACTTCATACCACTCACTACGCTGGGAAGGAGATAAACATGGCATTTGCAGAAGGGGAGCCCTTCAAGAAAGTTTATGGCCCCTTTTTTGTGTATCTGAACAAAGGAGATTCACAAGCCCTCTGGTCTGATGCTGTACAACAGCTGTCTGAGGAAATCAAAAGCTGGCCCTATGATTTCCCTAAATCAGATGATTTTTTCAAACCCAACAAACGGGGAACAGTGCAAGGACGATTACTAGTACAAGACAGGTATATTAATGGAGGGAGATTTCTATATGGCAATAATGCTTATATTGGTCTGGCTCTGCCTGGAGATTTGGGATCATGGCAAAGACAATGCAAGGGTTACCAATTTTGGACTCAAGCTGACAAGATAGGTCACTTCACAATTGAAAAAGTTGTACCGGGGGACTACAATTTGTATGCATGGGTTCCTGGCATTTTTGGGGATTACATATATAATACTACTATAACAATCACACCAGGATGTGTCATCCAATTGGGTTCCCTAATATTCAGTCCTCCAAGAAATGGACCTACCATATGGGAAATTGGCATCCCAGATCGCTCTGCTGCAGAGTTTTATGTTCCAGATCATTATCCTAACCTTGTCAACCGAGTATACATTGGGAAACCAGAACACAAGTTTAGGCAATATGGACTATGGCAGCGTTACACTGAGTTATATCCAAATCAGGACCTCGTTTATAATGTCGGTGTTAGTGATTATCGTAAAGATTGGTTTTATGCTCAGGTTACCAGGAACATAGGAAACAACACATTTCGCCCAACCACGTGGCAGATTAGATTTCATCTACCATTTGTTATAAGAGGAAACTACACTCTACAACTTGCCTTGGCCTCAGCCGCAAGTTCTACCTTAGTGGTTCGGTTCAATAACCCTGTGGCTATTCCTGCGCACTTCTCTACGGGGCTGATAGGCCAAGACAATGCCATAGCAAGACATGGCATCCATGGATTGCACTGGCCTTACAACATTGAAGTACCAAGCCATCTATTGGTAGAAGGAAACAACATAATCTATCTGAGGCAGGCCAAAGGTGTAACTCCTTTCCAAGGAATTATGTATGACTACATCCGTTTGGAAAGTCCTGGAACTTGA 1635 0.4226 MTTNINNDILHICSGIMKCIQFCRFILRRGSSGFYMYAIVERSEGFPALEIDHIRMVFKLQMDRFHYMAIAEDRQRVMPTPEDRSTGQRLDYDEAVLITQPSNPELQGEVDDKYQYSIENKDNNLHGWINLDSNSNESVGFWMITPSSEFRNGGPTHQALTSHVGPVTLNTLHTTHYAGKEINMAFAEGEPFKKVYGPFFVYLNKGDSQALWSDAVQQLSEEIKSWPYDFPKSDDFFKPNKRGTVQGRLLVQDRYINGGRFLYGNNAYIGLALPGDLGSWQRQCKGYQFWTQADKIGHFTIEKVVPGDYNLYAWVPGIFGDYIYNTTITITPGCVIQLGSLIFSPPRNGPTIWEIGIPDRSAAEFYVPDHYPNLVNRVYIGKPEHKFRQYGLWQRYTELYPNQDLVYNVGVSDYRKDWFYAQVTRNIGNNTFRPTTWQIRFHLPFVIRGNYTLQLALASAASSTLVVRFNNPVAIPAHFSTGLIGQDNAIARHGIHGLHWPYNIEVPSHLLVEGNNIIYLRQAKGVTPFQGIMYDYIRLESPGT. 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03535 544 Gene3D - 3 220 IPR014718 GO:0030246
Seca12g03535 544 CDD RGL4_M 241 341 IPR029413 -
Seca12g03535 544 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 24 542 - -
Seca12g03535 544 FunFam Rhamnogalacturonate lyase B 238 338 - -
Seca12g03535 544 Gene3D - 348 540 - -
Seca12g03535 544 SUPERFAMILY Starch-binding domain-like 238 339 IPR013784 GO:0030246
Seca12g03535 544 CDD RGL4_N 24 210 - -
Seca12g03535 544 Pfam Polysaccharide lyase family 4, domain III 351 539 IPR029411 -
Seca12g03535 544 SUPERFAMILY Galactose-binding domain-like 348 540 IPR008979 -
Seca12g03535 544 Gene3D - 238 338 - -
Seca12g03535 544 Pfam Polysaccharide lyase family 4, domain II 265 337 IPR029413 -
Seca12g03535 544 Pfam Rhamnogalacturonate lyase family 24 110 IPR010325 -
Seca12g03535 544 CDD RGL4_C 353 540 - -
Seca12g03535 544 SUPERFAMILY Galactose mutarotase-like 25 207 IPR011013 GO:0003824|GO:0005975|GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03535 Seca-Chr12 81246937 81250877 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03535 26 542 Polysaccharide Lyase AT1G09890 56.000 0.0 603
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03535 K18195 - gmx:100792575 899.427