Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03527 ATGGAGACTCAAAATCAATCAGAGCCTACAGAAGGATTAACAAGGATGCTTCCTCCACCATCCGGAACTTTCCAAGATCGTGAAGATCTCATTAAACATGTTCGTGATTTTGGAGCCAATCAAGGATATGTTGTGACCATCAAGAAGTCCCGAAAGGATAGAAGAGTCATCCTTGGCTGTGATAGAGGAGGTGTCTATCGTAATAGGCGCAAAATTGATGAAACTAAACGCAAGAGGAAAGCAACTTCACGCCTTATAAACTGTCCTTTTGAAGCCATAGGTAAAAAGGAAGATGATGTATGGGTACTTACCATAAAAAATGGAGATCACAATCATGAGCCATTGAAAGACATGTCAGAACATCCTTATAGTCGACGTTTCACTGAGGAAGAAGTGAGACAAATTAAACTAATGACTGAAGCTGGTGTAAAACCTCGTCAAGTGCTTAAAGCTCTCAAGCAAAACAATCCAGAACTTCAGTCAACCCCAAGGCACTTGTACAACCTCAAAGCAAAGATTCGTCAGGGAAATCTATCAGAGAAAACTTTTAAGTCATGGACGCCAAATAGATCTATCCCTGTTGAGACAAACAATAATTCATCTGATGGTTCATTAAACCAAAACTACCAGCAGCTGAAGGTGCCAAATTTTATTGGGGGTAAATATGTAGATTCTCAAGGTTGTGTGATTATTGATGTTACAAATCCTGCAACACAAGATGTTGTATCTCAAGTTCCTTTAACTACATATGAAGAGTTTAAAGCTGCAATTAATGCAGCCAAGCAAGCTTTTCCTTCATGGAAAAACACTCCTATCACCACTCGTCAACGTATTATGTTTAAACTTCAGGAGCTTATTCGTAGAGATATTGATAAGATTGCCATGAATATCACGATAGAACAAGGCAAGACATTAAAAGGTGCCCAAGGAGATGTGCTCCGTGGTTTAGAAGTGGTGGAGCATGCTTGTGGGATGGCAAATCTGCAAATGGGGGAATTTGTTCCTAATGCCTGTAATGGGATTGATGCATACTGTATCAGAGAGCCCCTCGGAGTTTGTGCTGGAATATGCCCCATTAACTTTCCAGCAGTGATATCCTTGTGGATGTTCCCAGTTGCAGTTGCATGTGGCAACACTTTTATTCTCAAGCCATGTGAGAAAAATCCAGGAGCTTCAATGATACTTGCAGCACTAGCAATGGAAGCTGGTTTGCCAGATGGTGTATTAAATATTGTTCATGGTACCCATGATATTGTTAATTACATATGTGATGATGAAGATATAAAAGCTGTATCATTTGTTGATCCAATTACAGCTGGAATGCACATATATGCCAGGGCTGCTGCTAGAGGGAAACGTGTTCAGTCAAATGCAGGTGGTATAAATCATGTAATTGTTATGCCGGATGCTAGCTTGGATGCTACTCTAGATGCCCTTGTTCCTGCTAGCTTTGGTGCAGCAGGAGAAAGGTGCATGACTTTAAGCACAGCTATTTTTGTTGGTGGTTCACTGCGATGGGAGGAAGAACTAGTGCAGCGTGCCAAATTACTTAGAGTGAATGCAGGAACAGATCCTGGTGCAGACATTGGTCCAGTTATTAGCAAAGAGGTGCAAACATTTATCTCAGTTTTCCCAAGGAAAAGGAGAAGATATGTGCACTAG 1662 0.4097 METQNQSEPTEGLTRMLPPPSGTFQDREDLIKHVRDFGANQGYVVTIKKSRKDRRVILGCDRGGVYRNRRKIDETKRKRKATSRLINCPFEAIGKKEDDVWVLTIKNGDHNHEPLKDMSEHPYSRRFTEEEVRQIKLMTEAGVKPRQVLKALKQNNPELQSTPRHLYNLKAKIRQGNLSEKTFKSWTPNRSIPVETNNNSSDGSLNQNYQQLKVPNFIGGKYVDSQGCVIIDVTNPATQDVVSQVPLTTYEEFKAAINAAKQAFPSWKNTPITTRQRIMFKLQELIRRDIDKIAMNITIEQGKTLKGAQGDVLRGLEVVEHACGMANLQMGEFVPNACNGIDAYCIREPLGVCAGICPINFPAVISLWMFPVAVACGNTFILKPCEKNPGASMILAALAMEAGLPDGVLNIVHGTHDIVNYICDDEDIKAVSFVDPITAGMHIYARAAARGKRVQSNAGGINHVIVMPDASLDATLDALVPASFGAAGERCMTLSTAIFVGGSLRWEEELVQRAKLLRVNAGTDPGADIGPVISKEVQTFISVFPRKRRRYVH. 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03527 553 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 459 537 IPR016163 GO:0016620
Seca12g03527 553 MobiDBLite consensus disorder prediction 1 22 - -
Seca12g03527 553 SUPERFAMILY ALDH-like 208 539 IPR016161 GO:0016491
Seca12g03527 553 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 233 458 IPR016162 GO:0016491
Seca12g03527 553 Pfam Aldehyde dehydrogenase family 223 537 IPR015590 GO:0016491
Seca12g03527 553 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 53 541 IPR010061 GO:0004491
Seca12g03527 553 FunFam Methylmalonate-semialdehyde dehydrogenase [acylating] 218 465 - -
Seca12g03527 553 MobiDBLite consensus disorder prediction 184 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03527 Seca-Chr12 80938404 80953352 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03527 213 538 Aldehyde Dehydrogenase Gene Family AT2G14170 72.699 7.82e-171 495
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca12g03527 Aldedh 5.7e-84 CL0099
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03527 K00140 - gmx:100796803 953.74