Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03522 ATGAACAAGAAGGAAGAAAGGAAAGAGAAAAAGAGAATCCCCAAAGTTGATTTATTGAATGCTAACCACAGAAAAGAGTTTGCGAGCGATGACGATGTAGCAGCATCACCATCACCGAGGGGTGTATTTGAGGTACCTATTTCAGGGACAGACTCTGATAGCACAGGAAGCAGCAACTACAGCACTTGCTCGCAAGGGATGGGAACGCAAAAGCAAAATGGAAGAGAAGGACATGGACAACAATGGAGGTCGATGATTGATGCCTTGAGGTTCAAGTCTGTTAGGAGATTCTCAACCATTCCTCTGCTTGCGGCCAGCTATGAGATCTCAAGGAGGAGCATAAGGAACAAGTTGGCTCGTAATCGAACCGCTAATGATGATGATGACAATGATTATGATGCTGCCATTGATCTTGATGGTATTCCTACAAAGCCTTCTTGGAAGAATTTCAGTTACGCAGACCTCGCTGCCGCAACTGACGATTTCAACCCTGAGAACTTGATTGGAAAAGGTGGTCATGCTGAAGTTTACAAAGGACAGTTACCTGATGGTCAAGTTGTAGCAGTGAAGAGACTAATGAAGAACGAAAAGGAAGCAGAGGACAGAGCTGGTGATTTCTTGTCAGAGCTTGGGATTATCGCTCACATTAACCACCCAAATGCAACACGCTTGCTTGGATTTGGCATCGACAGTGGCCTCTACTTTGTTCTACAATTCGCCCCACATGGCAGCCTTGCCTCTTTGCTCTTTGGTGGTTCTGAATGCTTGGAGTGGAAGATAAGGTTCAAGGTAGCTGTTGGGGTAGCAAAAGGATTGCAGTATCTCCATCACGATTGTCCAAGAAGAATCATTCACAGAGATATCAAAGCCTCAAACATATTGCTTAACCATAATAATGAAGCTGAGATTTCAGATTTTGGATTGGCAAAGTGGCTCCCAGATAAGTGGGCCCATCATGTTGTCTTCCCAATAGAAGGCACATTCGGGTATTTGGCTCCAGAGTACTTCATGCATGGACTTGTGGATGAGAAAACTGATGTTTTTGCATTTGGGGTTTTGTTACTGGAGCTCATAACAGGTCGTCGTGCAGTTGATTCAAATAGTAGGGAAAGTCTCGTGATTTGGGCCAAACCACTGCTGGATGAAAAGCTGGTCAAGGATATAGCAGACCCCAGATTAAAAGAGCAATATGATCCCATTGAAATGAAGCGTGCCATGGCAACAGCTTCCATGTGTGTCCACCACATGTCCTCTAAACGGCCATTCATGAACCAGGTTGTGCAGCTACTGAAGGGTGAAGAGGTGGCTATTGAACTCAATCAAAAATCAATAGCTCCAAGGTCTCTCTTGTTAGATGCATGTGACCTAGAAGACTATACTTGCTCAAATTATTTGAACGACCTCAATCGCCACAAGCAACTAATCATGGAGTGA 1434 0.4442 MNKKEERKEKKRIPKVDLLNANHRKEFASDDDVAASPSPRGVFEVPISGTDSDSTGSSNYSTCSQGMGTQKQNGREGHGQQWRSMIDALRFKSVRRFSTIPLLAASYEISRRSIRNKLARNRTANDDDDNDYDAAIDLDGIPTKPSWKNFSYADLAAATDDFNPENLIGKGGHAEVYKGQLPDGQVVAVKRLMKNEKEAEDRAGDFLSELGIIAHINHPNATRLLGFGIDSGLYFVLQFAPHGSLASLLFGGSECLEWKIRFKVAVGVAKGLQYLHHDCPRRIIHRDIKASNILLNHNNEAEISDFGLAKWLPDKWAHHVVFPIEGTFGYLAPEYFMHGLVDEKTDVFAFGVLLLELITGRRAVDSNSRESLVIWAKPLLDEKLVKDIADPRLKEQYDPIEMKRAMATASMCVHHMSSKRPFMNQVVQLLKGEEVAIELNQKSIAPRSLLLDACDLEDYTCSNYLNDLNRHKQLIME. 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03522 477 ProSitePatterns Serine/Threonine protein kinases active-site signature. 283 295 IPR008271 GO:0004672|GO:0006468
Seca12g03522 477 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 241 444 - -
Seca12g03522 477 Gene3D Phosphorylase Kinase; domain 1 135 237 - -
Seca12g03522 477 CDD STKc_IRAK 168 432 - -
Seca12g03522 477 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK1 137 239 - -
Seca12g03522 477 SUPERFAMILY Protein kinase-like (PK-like) 146 435 IPR011009 -
Seca12g03522 477 MobiDBLite consensus disorder prediction 1 31 - -
Seca12g03522 477 MobiDBLite consensus disorder prediction 48 79 - -
Seca12g03522 477 ProSiteProfiles Protein kinase domain profile. 162 437 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g03522 477 MobiDBLite consensus disorder prediction 1 79 - -
Seca12g03522 477 PANTHER OS08G0249100 PROTEIN 29 443 IPR046958 -
Seca12g03522 477 Gene3D Transferase(Phosphotransferase) domain 1 241 445 - -
Seca12g03522 477 SMART serkin_6 162 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g03522 477 ProSitePatterns Protein kinases ATP-binding region signature. 168 190 IPR017441 GO:0005524
Seca12g03522 477 Pfam Protein kinase domain 165 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03522 Seca-Chr12 80587002 80590426 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03522 149 433 Trihelix Transcription Factor Family AT1G70460 44.898 9.02e-70 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Seca12g03522 PK_Tyr_Ser-Thr 5.7e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03522 - - gmx:100794225 733.406