Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03517 ATGGATTTAACCCAAACAGAAAAAATTTATGTTGCAGTTGGCTATGATGTGCTAGATGGATTTCAAACATTGGATTGGGCTCTCAAGAAGTGGAATTCACATCCAATTTCTATAGTCATTTTGCATGTTAAATACAACACTTCCAATGACTACGTTTATTACCTCCTTGGAAAACTCCCTGCAAAATCTGTGTGTGAAGAGAAACTGGAACTTATCAGGAAACATGAACAAAATATAATCAACAAGTTACTTGCCAAGTATATAGCTTTATGTGACAATGTTCCAGCTGAAACACTTGAGGTTGAGAAATTTGATGAACCAATGCAGAGGCGCACCATAGACTTGATCCTTGGTCTTGGAATTACCAAATTGGTCATGGGGTTTTCATTCATGAGGCCGTCCTTGAAATCGAAAGATGCCATTAATGGATTGCTCTATGTTCATCAGCACAAGCCTGCCTTCTGTGAACTGTTCATTATTTGTGGAGGGAAACAAGTTTCACCACGAGTGAAGAATGATGAGATAATCATGGAGGACGATAATGGGGTCAAGGTCGCCAAAATGAGAGAGAGGATAAATTTTAAAGATTGGTTAGAGAGAAAGTTCACTGATAAAATGATTGACTCTCAAAATAGAAGTTCTTGTGTATCATCGACTTCCTCAACAAATTTGGAGCCCCATCTTAGCCAAAACCAATGGGAATTTTGTCTCCAAGAAATTGACAATTATTTACAAGAGTTATTGTCTTTAAATTTGGAAGAAGAAAGCTGTGAACAAGACAAGGGCGTCTCCCAAATTAGTCCAATTGAGACATATGTCAGGGAATCTAACAATTCTGATAATAAGAGTGCTGCAGAAAAAATTGAGGTCCTACAAGAAAAACTAAATGAGGCTTACAAGACCATCCAAATGAAGAGAAGAGAAGAAAAGGACAATTTGGAGAGACATGCAAAAGCTGAATGGGCTATTTATTTATGCAACCGTCAGGAAGAAGAACTTGAATATCTAAAAAGTGAAGAAGTGACAAGAAGGGAAGAACTAAAAAAGGAACTGAATGCAGAAAAAGAACAACTTCACAAAATTAGAATAGATGTTGAAGAGAGCAAGAAAAAGCTTAGTTCACTGGCAGCGCTGCAATCAGAGCTCCAAAACAGGCTTCATATTTCCACATTGACAATATCAGAATGTGAAACACAACTAGGGAAGGTAATGGCTGAAAGGACAGAGATGCTTATGGAGATAGAGGAGCTAAGGAGACAAAGGGATGTGGTGAACAGAAGGATCAAGTTTTTCAAAGAAAAAGATGCCATAGGAATGAGTGCTGAGATCACAGGGAAGGGTTGTAGTTTAAGGGAGTACACAGAAGAGGAGATCATGTTGGCCACCCACAATTTCTCGGAGCAATTGAGGTTGAAATCTGGAGGGGATTGGAGTAATGTGTATAGAGGACACATTAACCATTGCACTGTTGCAATCAAGATGCTCAATTCTGTTCCGGGCTTGTCCCAACAAGATTTCCAAGCTAAGGTGAGGTCTCTTGGTTGTATTCGGCAACCTCATCTGGTTGCTATATTGGGCTTCTGCTCAGAGCCAAAATGCTTGGTTTTGGAATACATGCATAATGGTAGCTTGGAAGAAATCCTATTTTGTAGGAAAAGAAGCAAGACCTTAAGCTGGAAAGACCGTGTAAGGATTGTCATAGAAGTTTGTTCAGGGATGGGCTTTCTAAATGCATTTGAGCCCAGGCCCATCATTCATTGTCATCCTTCTCTCTCCAACATCCTCCTAGACTGCAATCTTGTTGCAAAGATCACCGAGTTTGGGCTTCATGCGTGTGGAGAAGAAGAATGTAATTCTCAGTCAGATATGAAGGCAATAGGGGTTTTGTTGCTGCATCTATTGACTGGAAGAAGAAATTTTGTGACAATGGATAGAGAGGCCTTTCTTGATGAGATGGGAGAACAATGGCCATTGGATGTAGCAAGGGAACTTGTGGGGTTAGCAATGAGGTGCATGTCTATGAACTGTGAGCTCAATGCAGCCATGAGCATAACAAGGGTCATGGAGGAACTCAATGAGATTAGAAGAAAGGGTGATCACATGGTTGCTAGGGAAGAAGGGAGGGCTATAATTGGTGGAGATGTTGATGGACAGGATTCTAGTGATGTGCCTAGTGCTTTCATTTGCCCTATCCTTCAGGTTTGTCTCCTAATTTTTTGA 2220 0.4027 MDLTQTEKIYVAVGYDVLDGFQTLDWALKKWNSHPISIVILHVKYNTSNDYVYYLLGKLPAKSVCEEKLELIRKHEQNIINKLLAKYIALCDNVPAETLEVEKFDEPMQRRTIDLILGLGITKLVMGFSFMRPSLKSKDAINGLLYVHQHKPAFCELFIICGGKQVSPRVKNDEIIMEDDNGVKVAKMRERINFKDWLERKFTDKMIDSQNRSSCVSSTSSTNLEPHLSQNQWEFCLQEIDNYLQELLSLNLEEESCEQDKGVSQISPIETYVRESNNSDNKSAAEKIEVLQEKLNEAYKTIQMKRREEKDNLERHAKAEWAIYLCNRQEEELEYLKSEEVTRREELKKELNAEKEQLHKIRIDVEESKKKLSSLAALQSELQNRLHISTLTISECETQLGKVMAERTEMLMEIEELRRQRDVVNRRIKFFKEKDAIGMSAEITGKGCSLREYTEEEIMLATHNFSEQLRLKSGGDWSNVYRGHINHCTVAIKMLNSVPGLSQQDFQAKVRSLGCIRQPHLVAILGFCSEPKCLVLEYMHNGSLEEILFCRKRSKTLSWKDRVRIVIEVCSGMGFLNAFEPRPIIHCHPSLSNILLDCNLVAKITEFGLHACGEEECNSQSDMKAIGVLLLHLLTGRRNFVTMDREAFLDEMGEQWPLDVARELVGLAMRCMSMNCELNAAMSITRVMEELNEIRRKGDHMVAREEGRAIIGGDVDGQDSSDVPSAFICPILQVCLLIF. 740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03517 739 Gene3D Transferase(Phosphotransferase) domain 1 615 711 - -
Seca12g03517 739 PANTHER OS02G0152300 PROTEIN 9 705 - -
Seca12g03517 739 Coils Coil 281 312 - -
Seca12g03517 739 Gene3D Phosphorylase Kinase; domain 1 449 538 - -
Seca12g03517 739 Gene3D Transferase(Phosphotransferase) domain 1 539 614 - -
Seca12g03517 739 SUPERFAMILY Protein kinase-like (PK-like) 450 680 IPR011009 -
Seca12g03517 739 Coils Coil 400 434 - -
Seca12g03517 739 ProSiteProfiles Protein kinase domain profile. 466 691 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g03517 739 Coils Coil 240 260 - -
Seca12g03517 739 Coils Coil 337 385 - -
Seca12g03517 739 Pfam Protein tyrosine and serine/threonine kinase 475 610 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03517 Seca-Chr12 80417359 80427553 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03517 4 733 U-box Gene Family AT5G65500 44.846 0.0 566
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Seca12g03517 PK_Tyr_Ser-Thr 2e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03517 - - gmx:100795815 1025.39