Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03492 ATGGCGTGGCAGGAGCTTGGGAAGAAGAGAATATACATGAATTTCATAAGAGCTTTGACTATAACACCATTTAGGCATGTGGCACTGTCAAATTTTGCATCTATCTGTGCTCCACAGTCTGTTTATGCATCAGCAGGATGCATTCCAGATTTCATCAACCACTCATATATGGAAACTGGTTTTTGTGGTGGGACTAAAGAATGTGGAAGACGGTTTTTTCATGCTAGCCCACAAGTTTGGGCAAGAAGAGGTGATGAGCCGTTTGGTTTGAAGACCGCCCCAAAGAAGGAGAAGTATGTTAGAAGAGACAGTAGAAGCCAGCCACCAGTTGAAGCTCGATATGTTGCTCCTAAAGTCTCAGCTACCAAATCTAATCGTGATAAAACAGTAGAAATATTTGAAGGCATGACCCTTGTTGAACTAGCAAAACGTACTGGAAAATCAGTATCTTCTTTGCTGGATATCCTCTCAAATGTTGGTGAAAAGGTTGAATCAGAGTTTGAGCCTCTCAGCATGGATATTGCAGAGCTTGCTGCAATGGAGGTTGGAGTCAATGTTAAGAGGCTACATTCAGCTGAAGGTGCAGAGATTTTACCACGTCCTGCAGTTGTAACAGTGATGGGACATGTTGATCATGGTAAAACTTCTCTTCTCGATGCCTTGCGTCAAACATCAGTGGCAGCCAAGGAGGCTGGTGGCATAACTCAGCATCTAGGTGCCTTTGTGGTGGCCATGCCATCAGGAGCATCAATCACATTTCTTGACACTCCTGGTCATGCTGCGTTTAGTGCAATGCGGGCTAGAGGTGCAGCAGTCACAGATATAGTAGTGCTAGTTGTTGCTGCAGATGATGGTGTGATGCCTCAAACACTTGAAGCCATGTCCCATGCAAAAGCAGCTAATGTACCAATTGTAGTTGCAATTAATAAATGTGATAAACCAGGTGCAAATCCTGAAAGAGTAAAACTGCAGCTTGCTTCAGAGGGCTTACTGCTGGAGGAGATGGGTGGGGATGTTCAGGTTATTGAAGTTTCTGCAACTGAAAAAACCGGACTGGATAACCTAGAGGAAGCTTTACTCCTTCAGGCTGATTTGATGGATCTTAAAGCACGAATTGATGGGTCTGCTCAAGCATATGTGGTGGAAGCAAGACTTGACAAAGGACGGGGTCCTTTGGTAACTACTATAGTGAAGGCAGGGACTCTAGTTTGTGGTCAACATGTGGTTATAGGCTCAGAGTGGGGAAGAATAAGGGCGATCAAAGATACGGCAGGGAGGTTAACTCAACGAGCAACACCTGCAATGCCTGTTGAGATTGAAGGACTTCGAGGGCTGCCGATGGCTGGTGATGATGTTATTGTTGTTCATTCTGAGGAGCGAGCTAGAATGCTTAGTTCTGGTAGGAAAAGGAAATCTGAGGAGGACAGGCTTAGGAGAAAGATGATACAAGACAAGCCAACTACTTCAGATGATTCTGAGGAGGTTCCACAGAGGGTTGAATTGCCAGTAATTGTAAAAGCAGATGTTCAGGGAACTGTTCAAGCTGTCACAGATGCATTGCGAACTTTAAATAATTCTCAGGTTCTTGTGAATGTTGTCCATGTTGGTGTTGGGCCGATTTCTCAATCTGATGTGGACTTAGCACAAGCTTGTGGTGCATGCATAGTTGGATTCAATGTCAAGAGTCCACCTACTTCTCTTAGTCAGGCAGCAACTCGTGCTAGTATCAAGGTAATTCTGCACCGTGTGATTTACCACCTGTTGGAGGACATAGGCAATTTGATAATAGAGAAGGCCCCTGGGACTTTTGAGACCCAGGTAGCTGGGCAGGCAGAAGTGCTGAATATCTTTGAGATCAAAGGGAGCAAGTCCAAGGGACCTGATGTGAAGATAGCTGGTTGTCGGGTTATTGATGGTTTTGTGACCAGGTCATCAACCCTGAGGCTTCTAAGGAGTGGAGAAGTCGTGTTTGAAGGGCTTTGTGCATCTCTTAAGCGGGAGAAGCAGGATGTGGATACTGTGAAGAAGGGAGGTGAGTGTGGACTAGTAATTAGTAACTGGTATGATTTCCAGATTGGAGACGTCATCCAGTGCTTGGAACAAGTTGTAAGGAAGCCCAAGTTCGTTAAGTCGGAGAGTGGTGCTGTTCGAATTGAGTGCTGA 2163 0.4521 MAWQELGKKRIYMNFIRALTITPFRHVALSNFASICAPQSVYASAGCIPDFINHSYMETGFCGGTKECGRRFFHASPQVWARRGDEPFGLKTAPKKEKYVRRDSRSQPPVEARYVAPKVSATKSNRDKTVEIFEGMTLVELAKRTGKSVSSLLDILSNVGEKVESEFEPLSMDIAELAAMEVGVNVKRLHSAEGAEILPRPAVVTVMGHVDHGKTSLLDALRQTSVAAKEAGGITQHLGAFVVAMPSGASITFLDTPGHAAFSAMRARGAAVTDIVVLVVAADDGVMPQTLEAMSHAKAANVPIVVAINKCDKPGANPERVKLQLASEGLLLEEMGGDVQVIEVSATEKTGLDNLEEALLLQADLMDLKARIDGSAQAYVVEARLDKGRGPLVTTIVKAGTLVCGQHVVIGSEWGRIRAIKDTAGRLTQRATPAMPVEIEGLRGLPMAGDDVIVVHSEERARMLSSGRKRKSEEDRLRRKMIQDKPTTSDDSEEVPQRVELPVIVKADVQGTVQAVTDALRTLNNSQVLVNVVHVGVGPISQSDVDLAQACGACIVGFNVKSPPTSLSQAATRASIKVILHRVIYHLLEDIGNLIIEKAPGTFETQVAGQAEVLNIFEIKGSKSKGPDVKIAGCRVIDGFVTRSSTLRLLRSGEVVFEGLCASLKREKQDVDTVKKGGECGLVISNWYDFQIGDVIQCLEQVVRKPKFVKSESGAVRIEC. 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03492 720 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 199 369 IPR000795 GO:0003924|GO:0005525
Seca12g03492 720 Pfam Translation-initiation factor 2 493 591 IPR023115 -
Seca12g03492 720 FunFam Translation initiation factor IF-2 196 371 - -
Seca12g03492 720 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 493 609 IPR036925 -
Seca12g03492 720 FunFam Translation initiation factor IF-2 604 707 - -
Seca12g03492 720 CDD IF2_eIF5B 203 366 - -
Seca12g03492 720 SUPERFAMILY Translation proteins 373 455 IPR009000 -
Seca12g03492 720 Gene3D Translation factors 603 705 - -
Seca12g03492 720 NCBIfam translation initiation factor IF-2 127 703 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Seca12g03492 720 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 198 368 IPR027417 -
Seca12g03492 720 SUPERFAMILY Translation proteins 604 705 IPR009000 -
Seca12g03492 720 NCBIfam small GTP-binding protein domain 202 355 IPR005225 GO:0005525
Seca12g03492 720 Gene3D - 197 371 IPR027417 -
Seca12g03492 720 Gene3D - 496 601 IPR036925 -
Seca12g03492 720 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 111 713 IPR015760 -
Seca12g03492 720 FunFam Translation initiation factor IF-2 496 603 - -
Seca12g03492 720 Pfam Elongation factor Tu GTP binding domain 204 360 IPR000795 GO:0003924|GO:0005525
Seca12g03492 720 MobiDBLite consensus disorder prediction 463 495 - -
Seca12g03492 720 CDD IF2_mtIF2_II 376 470 IPR044145 -
Seca12g03492 720 Hamap Translation initiation factor IF-2 [infB]. 8 706 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Seca12g03492 720 Gene3D Translation factors 372 488 - -
Seca12g03492 720 CDD mtIF2_IVc 609 698 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03492 Seca-Chr12 78942294 78950425 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03492 200 589 Eukaryotic Initiation Factors Gene Family AT1G21160 27.533 2.19e-26 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03492 K02519 - gmx:100781314 1174.46