Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03491 ATGCAAGTGAAAATGAACTTGGTATCTGTTCTTTTGCTATTGGCTAGCTCATGTTGTTTTGCGTTGCCTGAGCTTGATTTACAAGAAGATGCACTCTTTGCATTGAAGTTATCATTGAATGCTTCACCCAGCCAGCTTACTAACTGGAACAAAAATCAAGTAAATCCTTGTACCTGGTCCAATGTTTACTGTGACCAGAATAGCAATGTTGTTCAAGTTTCACTAGCATTTATGGGATTCACAGGATACTTGACGCCAAGAATAGGAGCTCTAAAAACCCTTACAACTCTTTCCTTGCAAGGGAACAGCATCACCGGTGACGTACCGAAAGAAATAGGAAATCTTACAAGCTTGGTCAGACTGGATCTGGAGAACAACAGATTAACTGGTGAAATACCATCTTCCCTTGGTAATCTTAGAAAGCTTCAATTCTTGACACTGAGTCAAAACAACCTCAATGGGACAATCCCAGAATCACTTGCCAGTCTCCCGAGCTTGATCAATGTCCTGCTAGATTCTAATGATCTTAGTGGACAGATTCCAGAGCAGTTATTCAACGTTCCCAAGTACAATTTCTCTGGTAATAAGTTGAATTGCGGCGTGAATTATCATCATCTTTGCATATCTGATAATGCAGATCAAGGTTCATCACACAAACCAAAAGTAGGCCTCATAGTTGGAATAGTTATAGGTTTAGCTGTCATCTTTTTTCTTGGTGGCCTGCTGTTTTTCTGGTGCAAAGGGTACAAGCGTGAAGTTTTTGTAGATGTTGCAGCTGTCCATAGGAACCTGTTACGGCTCATTGGGTTTTGTACTACTCCAACTGAACGCCTCTTGGTTTATCCCTTCATGCAGAACTTGAGTGTTGCCCATCGATTACGAGTGATATTTGACTACTTGAATACTGATGCAGAACTCAAACCTGGGGAACATGTTTTGGATTGGGCTACAAGAAAACGAGTGGCTCTGGGAACTGCCCGTGGCCTAGAATATCTTCACGAGCAATGTGATCCTAAGATTATTCATAGGGACGTGAAGGCAGCTAATATATTACTAGATGGAGATTTTGAAGCAGTTGTTGGTGACTTTGGTTTGGCAAAATTAGTCGATGTTCGAAAGACTAATGTAACAACTCAAGTTCGTGGGACAATGGGCCATATAGCTCCTGAATACTTGTCCACTGGAAAATCTTCAGAAAGGACTGATGTTTTTGGTTATGGGATTATGCTTTTGGAGCTTGTTACAGGTCAACGCGCAATTGACTTTTCACGTTTGGAAGACGAAGATGATGTGTTATTGCTTGACCATGTTAAGAAACTACAACGGGAGAAAAAACTGGATGCTATTGTTGACAGCAACCTTAACAAAAATTACAACATAGAAGAGGTTGAAATGATTGTACAAGTTGCATTACTCTGCACACAAGGATCGCCAGAGGATCGTCCCGTAATGTCAGAGGTTGTAAGAATGCTAGAGGGAGAAGGGCTGGCTGAAAGGTGGGAGGAATGGCAGCATGTGGAGGTCACTCGGAGGCAAGACTATGAGAGACTACAAAGGAGATTGGAGTTTGGAGAAGATTCGGTTTATAATCAAGATGCCATTGAGTTGTCCGGTGGAAGATGA 1623 0.4177 MQVKMNLVSVLLLLASSCCFALPELDLQEDALFALKLSLNASPSQLTNWNKNQVNPCTWSNVYCDQNSNVVQVSLAFMGFTGYLTPRIGALKTLTTLSLQGNSITGDVPKEIGNLTSLVRLDLENNRLTGEIPSSLGNLRKLQFLTLSQNNLNGTIPESLASLPSLINVLLDSNDLSGQIPEQLFNVPKYNFSGNKLNCGVNYHHLCISDNADQGSSHKPKVGLIVGIVIGLAVIFFLGGLLFFWCKGYKREVFVDVAAVHRNLLRLIGFCTTPTERLLVYPFMQNLSVAHRLRVIFDYLNTDAELKPGEHVLDWATRKRVALGTARGLEYLHEQCDPKIIHRDVKAANILLDGDFEAVVGDFGLAKLVDVRKTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRLEDEDDVLLLDHVKKLQREKKLDAIVDSNLNKNYNIEEVEMIVQVALLCTQGSPEDRPVMSEVVRMLEGEGLAERWEEWQHVEVTRRQDYERLQRRLEFGEDSVYNQDAIELSGGR. 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03491 540 SUPERFAMILY L domain-like 30 212 - -
Seca12g03491 540 SMART serkin_6 224 491 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g03491 540 Gene3D Phosphorylase Kinase; domain 1 246 285 - -
Seca12g03491 540 Pfam Leucine rich repeat 117 176 IPR001611 GO:0005515
Seca12g03491 540 SUPERFAMILY Protein kinase-like (PK-like) 249 492 IPR011009 -
Seca12g03491 540 Pfam Leucine rich repeat N-terminal domain 28 65 IPR013210 -
Seca12g03491 540 Gene3D Transferase(Phosphotransferase) domain 1 296 511 - -
Seca12g03491 540 Pfam Protein kinase domain 256 488 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g03491 540 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
Seca12g03491 540 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 5 502 - -
Seca12g03491 540 FunFam Putative LRR receptor-like serine/threonine-protein kinase 25 209 - -
Seca12g03491 540 FunFam Somatic embryogenesis receptor-like kinase 1 284 511 - -
Seca12g03491 540 ProSitePatterns Serine/Threonine protein kinases active-site signature. 340 352 IPR008271 GO:0004672|GO:0006468
Seca12g03491 540 Gene3D Ribonuclease Inhibitor 26 208 IPR032675 -
Seca12g03491 540 ProSiteProfiles Protein kinase domain profile. 206 496 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03491 Seca-Chr12 78906526 78919858 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03491 248 540 Receptor kinase-like Gene Family AT5G10290 81.570 6.40e-169 490
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Seca12g03491 Pkinase 7.6e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03491 - - vvi:109122118 571.622