Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03490 ATGGCCGTTGTACCTTTCGGTAGTACATCAGCTACTCAATGGGGAATTCGTCCTCAGCTTATGGCGAGATCCAGTACCATGGGCAGGATTGCATCATCCAGCCACAATGTCACAAGCAGGATAAGCTTTATGGCTGCCCCAAGTTCAAGCTTCTTTTCCCGGGATTCCTTGCATGCACTATTTAACATAGGTTCATCTCAAACTTTGCATCGTCGCAGGGGATCAAGGTTGATAGTTAGGGCAGATGCAGATTACTATTCCGTCCTTGGGGTGTCAAAAAGTGCTAGTAAATCTGAAATTAAGAGTGCTTATCGGAAGCTTGCTCGGAATTATCATCCAGATGTGAACAAAGAACCTGGTGCAGAAGAGAAGTTTAAGGAAATAAGTAATGCATATGAGGTCTTATCAGATGATGAGAAACGATCCATATATGACAGATATGGAGAGGCCGGGCTTAAAGGTTCGGGAATGGGCATGGGGGATTTCTCCAATCCTTTTGACCTGTTTGAGACACTGTTTGAGGGCATGGGTGGTATGGGCGGCATGAGCGGCAGAGGTTCTTGGAATGGAGCAGTTGATGGCGAGGATGAGTATTACAGTCTTGTTTTGAACTTCAAAGAAGCTGTTTTTGGAGTGGAAAAGGAGATAGAGGTTAGGCGATTAGAGACCTGTGGAACTTGCAATGGTTCAGGGGCTAAACCAGGGACTAAATCATCCAGATGTAGCACTTGTGGTGGTCAGGGTCGGGTTGTCACATCAACAAGGACCCCATTAGGTATCTTTCAGCAGTCTATGACATGCTCTTCTTGCAATGGGACTGGAGAAACTTCAACACCTTGCAATACATGTTCTGGGGATGGTCGAGTGAGGAAAACAAAGCGGATAAGTCTCAAGGTTCCAGCTGGTGTGGATTCTGGTAGCCGTTTAAGGGTACGAAATGAAGGTAATGCTGGAAGGCGTGGGGGTGCTCCTGGTGACCTCTTTGTTGTTCTTGAAGTTATCCCAGATCCTGTGCTTAAACGAGAAGACAATAACATTTTATACACTTGTAAGGTGTCTTATATTGATGCAATCTTGGGGACTACAGTTAAGGTTCCTACTGTGGATGGCATGGTGGATTTGAAAATCCCAGCTGGTACCCAACCAGGCTCAACACTTGTTATGGCTAGGAAAGGTGTTCCCCTCCTTAACAAAAAGAATATGAGGGGTGATCAATTGGTGCGAGTGCAAGTTGAAATCCCTAAAAGACTGAGCAGTGATGAGAGAAAACTTATTGAGGAACTTGCTGATTTAAGCAAAGGAAAGACTGCCGCCAGTAGGAGATAA 1326 0.4532 MAVVPFGSTSATQWGIRPQLMARSSTMGRIASSSHNVTSRISFMAAPSSSFFSRDSLHALFNIGSSQTLHRRRGSRLIVRADADYYSVLGVSKSASKSEIKSAYRKLARNYHPDVNKEPGAEEKFKEISNAYEVLSDDEKRSIYDRYGEAGLKGSGMGMGDFSNPFDLFETLFEGMGGMGGMSGRGSWNGAVDGEDEYYSLVLNFKEAVFGVEKEIEVRRLETCGTCNGSGAKPGTKSSRCSTCGGQGRVVTSTRTPLGIFQQSMTCSSCNGTGETSTPCNTCSGDGRVRKTKRISLKVPAGVDSGSRLRVRNEGNAGRRGGAPGDLFVVLEVIPDPVLKREDNNILYTCKVSYIDAILGTTVKVPTVDGMVDLKIPAGTQPGSTLVMARKGVPLLNKKNMRGDQLVRVQVEIPKRLSSDERKLIEELADLSKGKTAASRR. 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03490 441 Gene3D DnaJ domain 81 184 IPR036869 -
Seca12g03490 441 CDD DnaJ_C 195 417 - -
Seca12g03490 441 CDD DnaJ 84 137 IPR001623 -
Seca12g03490 441 SUPERFAMILY HSP40/DnaJ peptide-binding domain 339 425 IPR008971 GO:0006457|GO:0051082
Seca12g03490 441 ProSiteProfiles dnaJ domain profile. 84 148 IPR001623 -
Seca12g03490 441 Hamap Chaperone protein DnaJ [dnaJ]. 81 437 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Seca12g03490 441 NCBIfam molecular chaperone DnaJ 84 430 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Seca12g03490 441 Pfam DnaJ central domain 224 287 IPR001305 GO:0031072|GO:0051082
Seca12g03490 441 SUPERFAMILY Chaperone J-domain 81 183 IPR036869 -
Seca12g03490 441 SMART dnaj_3 83 140 IPR001623 -
Seca12g03490 441 FunFam Molecular chaperone DnaJ 216 292 - -
Seca12g03490 441 Gene3D - 334 441 - -
Seca12g03490 441 CDD DnaJ_zf 224 287 IPR001305 GO:0031072|GO:0051082
Seca12g03490 441 PRINTS DnaJ domain signature 86 104 IPR001623 -
Seca12g03490 441 PRINTS DnaJ domain signature 120 140 IPR001623 -
Seca12g03490 441 PRINTS DnaJ domain signature 104 119 IPR001623 -
Seca12g03490 441 PRINTS DnaJ domain signature 140 159 IPR001623 -
Seca12g03490 441 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 32 437 - -
Seca12g03490 441 Pfam DnaJ domain 84 145 IPR001623 -
Seca12g03490 441 FunFam Putative Mitochondrial DnaJ chaperone 275 329 - -
Seca12g03490 441 FunFam Chaperone protein dnaJ A6 chloroplastic 81 184 - -
Seca12g03490 441 FunFam Chaperone protein dnaJ 1, mitochondrial 334 441 - -
Seca12g03490 441 SUPERFAMILY HSP40/DnaJ peptide-binding domain 192 346 IPR008971 GO:0006457|GO:0051082
Seca12g03490 441 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 211 291 IPR036410 -
Seca12g03490 441 Gene3D - 224 287 - -
Seca12g03490 441 Pfam DnaJ C terminal domain 199 414 IPR002939 -
Seca12g03490 441 Gene3D - 194 329 - -
Seca12g03490 441 ProSitePatterns Nt-dnaJ domain signature. 125 144 IPR018253 -
Seca12g03490 441 ProSiteProfiles Zinc finger CR-type profile. 211 292 IPR001305 GO:0031072|GO:0051082
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03490 Seca-Chr12 78778998 78783396 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03490 85 147 C2H2 Transcription Factor Family AT1G74250 46.377 1.08e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03490 K03686 - gmx:100786143 766.533