Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03488 ATGGAGGAGACTATAGTGCCTCCATATGTAGATTTGCAGGTTGGAGAACCAACGTTTGTATTTGAAGCTAAAGCCATTCAAAGAATGGAACTACTGGTATTAAGTACTTTGAGGTGGAAAATGCAAGCTTTAACTCCATGTTCTTTCATAGACTACTTCCTCAGAAAGATGACTTGTGAGCAGCATCCAGCAATGTCATCTATTTTGAGATCAGTGGAGCTCATCCTTAACATAATAAAATGCACTGATTTCTTGGAATACAGACCTTCTGAAATTGCCGCGGCAGTGGCAATTTCTGTTTCACAAGCAAAATTGATTGATGAGGCCTTATCTTGTTTGGTCATTGTAGAGAAGGAGAGAATGTTGAAGTGTATTGGACTGATAAGAGATATGTTCTTCTTCAAAGTTTCTGGTAATTTAGGCAGCCCTGTTGGGGTGTTGGATACTGCATGCTTGAGCTCTAAAAGTGGGGAATTAACAGTTGAATCATATACAAATTCTTCCCACAACAGTTCAAATACTAAGAGGAAAAAATCAGAGGGACCTTCTGATGGGTCTTGCTAG 564 0.3936 MEETIVPPYVDLQVGEPTFVFEAKAIQRMELLVLSTLRWKMQALTPCSFIDYFLRKMTCEQHPAMSSILRSVELILNIIKCTDFLEYRPSEIAAAVAISVSQAKLIDEALSCLVIVEKERMLKCIGLIRDMFFFKVSGNLGSPVGVLDTACLSSKSGELTVESYTNSSHNSSNTKRKKSEGPSDGSC. 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03488 187 PANTHER CYCLINS 1 129 IPR039361 -
Seca12g03488 187 MobiDBLite consensus disorder prediction 163 187 - -
Seca12g03488 187 Gene3D - 43 124 - -
Seca12g03488 187 FunFam D6-type cyclin 33 126 - -
Seca12g03488 187 MobiDBLite consensus disorder prediction 173 187 - -
Seca12g03488 187 Pfam Cyclin, C-terminal domain 45 131 IPR004367 -
Seca12g03488 187 SUPERFAMILY Cyclin-like 1 41 IPR036915 -
Seca12g03488 187 SUPERFAMILY Cyclin-like 27 131 IPR036915 -
Seca12g03488 187 Gene3D - 1 42 - -
Seca12g03488 187 CDD CYCLIN_AtCycD-like_rpt2 45 128 - -
Seca12g03488 187 SMART Cyclin_C_2 44 167 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03488 Seca-Chr12 78624579 78625806 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03488 1 101 Core Cell Cycle Gene Families AT5G65420 61.765 5.60e-40 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03488 K18810 - gmx:100794010 206.068