Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03486 ATGCCAATGGATTTCGAGGAGCATGAGGAAGAGATGATGGGAATGGGTGAAGCGAGTTACGACGACTCGCTCGTTAACCCACCCCGAGTCAGAATGCCGAGTCCTGTCCAAGACCCCACCCCAGCGGTGGTGATGGTCAGGAACAGCGGCAAAGGGAGGTACAAAGAGTGCCTAAAGAACCACGCCGTCAGCATTGGAGGCCACGCTGTCGACGGTTGCCGTGAGTTCATTGCCGCCGGTGAGGAAGGCACACTCGACGCTCTCAAATGCGCCGCCTGCAACTGCCACCGCAACTTCCACCGCAAGGATAGCCCCATAACCGTCGCCGGAGGCCAGTACCATTCCTTCCACCGCCACCAGGCGCCGCAGTTCGCTGCGTGTTATCGTACCCCGTCGGGGTACCTCCACGTGGCGCCGCCGAGAGCGGCGGTTGCTGCACCGCTGGCTCTGCCAGCGAACTCAGGGGGTGGTGGTGGGACCCAGAGCGGTGGGGAGGATCATGAAGAGGTTTCGGACCCGAATGGTGGTGGTGGAGGGTCGAACTCCAAGAAGAGGTTCAGGACCAAGTTCAGTCCTGAGCAGAAGGAGAAGATGCTGGCTTTTGCTGAGAAAGTGGGTTGGAGGCTTCAGAAGCATGATGATGGTTCTGTGCAGGAGTTCTGTAACGAGGCTGGTGTCAAGCGTCAGGTTCTTAAGGTTTGGATGCATAACAACAAGCACACTCTTGGCATGAAGCCCTAG 741 0.5843 MPMDFEEHEEEMMGMGEASYDDSLVNPPRVRMPSPVQDPTPAVVMVRNSGKGRYKECLKNHAVSIGGHAVDGCREFIAAGEEGTLDALKCAACNCHRNFHRKDSPITVAGGQYHSFHRHQAPQFAACYRTPSGYLHVAPPRAAVAAPLALPANSGGGGGTQSGGEDHEEVSDPNGGGGGSNSKKRFRTKFSPEQKEKMLAFAEKVGWRLQKHDDGSVQEFCNEAGVKRQVLKVWMHNNKHTLGMKP. 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03486 246 Gene3D - 169 243 - -
Seca12g03486 246 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 42 242 - -
Seca12g03486 246 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 54 103 IPR006456 -
Seca12g03486 246 MobiDBLite consensus disorder prediction 153 192 - -
Seca12g03486 246 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 53 103 IPR006456 -
Seca12g03486 246 FunFam Zinc-finger homeodomain protein 2 174 244 - -
Seca12g03486 246 Pfam ZF-HD protein dimerisation region 53 103 IPR006456 -
Seca12g03486 246 NCBIfam homeobox domain, ZF-HD class 183 239 IPR006455 -
Seca12g03486 246 SUPERFAMILY Homeodomain-like 173 242 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03486 Seca-Chr12 78369999 78370739 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03486 3 242 ZF-HD Transcription Factor Family AT4G24660 48.988 1.08e-64 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Seca12g03486 ZF-HD_dimer 1.5e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03486 - - lja:Lj0g3v0229739.1 302.367
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g03486 12 78369999 78370739 Seca12g03486 12 78369999 78370739 PCT