Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03485 ATGTTGGATGGGACACCAACTGCTATTGTGAACCAAAAGACACAAGGCCCCGAGACTCTAATTGGATGTGCTGCCTCTACTGGTCTTGCTGTTATCAATGTCATCCTCTCCATTGGCCACATCTCCGGTGCTCATCTCAACCCTGTTGTTTGA 153 0.4837 MLDGTPTAIVNQKTQGPETLIGCAASTGLAVINVILSIGHISGAHLNPVV. 51
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03485 50 Gene3D Glycerol uptake facilitator protein. 2 50 IPR023271 -
Seca12g03485 50 PANTHER AQUAPORIN NIP2-1 4 50 IPR034294 -
Seca12g03485 50 Pfam Major intrinsic protein 14 50 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca12g03485 50 SUPERFAMILY Aquaporin-like 5 50 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03485 Seca-Chr12 78294421 78294573 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03485 1 50 Major Intrinsic Protein MIP AT1G80760 78.000 3.04e-19 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03485 K09874 - pvy:116125422 80.4925