Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03467 AATCAAGATAAAGATATCAAGAATGTAGTTGAACATGTTACACGTTTTCTAGACAAGATAGACCTGTTCGTTGCTGACCATCCAGTGGGATTAGAATCTCGTGTGCGAGATGTGATTCAACTATTGAAGATTGGACAATCGGAAGATACTCGAGAATATGGAATGTTGGGGAAGGGAGGGATTGGTAAAACAACCCTTGCCAAAGCCGTTTTCAATCAAATTGAACGCGATATTGAGGCTAAGAGCATCCTGTTAAATGTTCGCGAAGTTTGGGAACAGAATAATAGTGAAGTTTCTTTAGAAGAACGTCTTCTTTCAGATATCTACAAAACAAACAAAATAAGGATAGATGCAACTGAATCAGGAAAAAATATATTGATGGAAAGACTTCGCAAAAAAAGGATATTTCTTGTGCTTGACGAAGTCTATACTTATGACCAGTTAAATGCTTTGCGTCAATGGATTGGTGAAGGAAGTAGAATACTCATCACAACAGGAGCTATAGATCCGCTCTATGCACTTGATAATACGTATGAGATGAAAGCAATGGATGCAGATGAATCTCTTGAGCTTTTTAGTTGGCATGCATTCAAGCAAGCAAGTCCTAAACAAGATTTTGTTGAACTTTCAAAGGAAGTAGTTCATTGTGCTGGGGGATTGCCGCTAGCTCTTGAAGTACTTGGGTCCCATTTGTTTGGAAGGGAAATATCAGAGTGGGAGAGTATGCTGCATGAACTCAAAAGAAATCCCCATAGGGATTTAAGACAAATTCTAAAAGTATGTTTTGATGGGTTAAGTGATGAAGTGAAAATGATATTCCTTGATATAGCACATTTCTTCATTGGGATGGATAGAGACCATGTAATACGTGTATTAAATAGCTCGGCACAGTTCGCAGAACTTGGAGTAAACATCCTCGTAAGAAAACACCTTATAACCATTGATGAGAACAACAAGGTTGGAATGCATGATGAGCTGCGACACATGGGAAGAGCAATCATGATGGAGGAACCACGAACTATGCCTGAGTCAAGGATCTTCGATGTGTTCTTGAGTTTCAGAGGAGAAGATAGTCGTGCATCATTCATTTCACATCTCTGTACCTCTCTTCAAAATGCCGGGATTTATGTTTTCATGGACGATGATGAGATTCAAAGGGGAGATCAAATCTCAGTCTCATTGTTGCAAGCAATAAGAAGGTCTAGAATTTCTATCATTATTTTGTCACAAAATTATGCTAATTCAAGATGGTGCATGCTAGAATTGGAAAACATTATGGAAAGTCGCAGAAGCATGGGTCTAGTGGTTGTGCCAGTGTTCTATGGTGTAGATCCCTCAGATGTGCGTCAGCAAACAGGTAAGTTTGGAGAAGGTTTTAAAAATCTTATTAAAGGAATCTCAGTGGATGTAACTGTGAGGAATTGGAGGATAGCACTCCTTGAAGTTGGTGGCATAGCAGGGGTTGTCGTCATTAATTCCAGGAATGAAAGTAATGATATCAAGAAAGTTGTTGAACAAGTTACTGATTTGTTAGACAAGACAGACTTGTTTGTTGCAGAGCATCCAGTGGGCATCGAAGATCGTGTGCAACATGTTATTCAACTAATGGATAACAATCAATTACTAGGGATATCAGGGATGGGAGGGCTCGGTAAATCAACCATTGCTAAAGCCGTTTATAATCAAATTCGTCGCAATTTTGAGGCTAAGAGCTTCCTCCTAAATATCCGGGAAGCTTGCGAACAAAACAATGGCATTGTTTCTTTACAACAAAAGCTTCTTTCTGATATCTACAAAACAACAAAGATAAAGATAGATACAGTTGAATCAGGAAAAATGGAATTAAGGAAAAGACTTGGCCAAAAGACAATATTTCTTGTTCTTGATGATGTGAATGAAGAAGAACAATTGGATGCTTTATGTGGAAGTCGTGTATGGTTTAGCCACAAAAGTAGGATAATAATCACAACAAGAGATGATGATCTACTTAGCAAGCTTGAGGTTGACCATATATATAAAATGAAGGAAATGGATGAAAGTGAATCTACTGAGCTTTTTAGTTGGCATACATTCAAGCAACCAAGTCCTAGAGAAAGTTTTGCTGACCTTTCTAGAGACGTGGTTGAATATTGTGAGGGATTGCCGCTTGCTCTTCAAGTCATTGGGTCCTTTCTGAGAAATAGGGGGAAAAGAGTGTGGAAGAGTGTATTGGAGAAACTTAAAATCATTCCTCATAAAAAAGTACAAAAGAAGCTCAGAATAAATTTTGATGGTTTAAGTGATGATAAAGTGAAAGAAATATTCCTTGATATAGCCTTTTTCTTTATTGGGATGGACAGAGATGAGGTAATTGAGATATTAAATGACTGTGGGCATTTTGCAGAAATTGGAATAGATATCCTTGTACAACAAAGCCTTGTAACCGTTGACAATAAGAACAAGCTTGGAATGCATAATTTGCTACGAGACATGGGAAGAGAAATCATTCGTGAGAAATCACCAGAGGAGGTCGAGAAGCGCAGTAGATTATGGTTTTATGAGGACATACTTAAAGTGCTATCAACAAATACTAGAACGACAAATGTTCAAGGATTGACTTTGAAGTCTCTTTCTATGAATACAACAACTTATTATTTGGAAACCGAAGCATTTAAGAAGATGGATAAACTTAGATTGCTTCAACTTGCTGGTGTAGAACTTGGTGGAGATTATAAATATCTTTCAAGAGATCTTAGATGGCTTTGCTGGCATGGATTTCCTTTAAAATATACACCTGCAGAGTTTCATCAAGGAAGTTTAGTTGCCATTGAGTTAAAATATTCCAATCTGGAACGGGTTTGGACGAAGTCGCAGTTGCTGAAGAAGTTGAAATTTCTCAATCTTAGTCATTCTCCTAATTTGAGACAAGCCCCAGACTTCTCGAACTTACCAAATCTTGAAAAGTTAATACTCAAAGATTGCACTAGTTTGTCTTTGATCTCTCATACAATTGGACAGCTCAATGAACTGCTTCTGATAAATTTGAAGAACTGTACAAGTCTTCGTAAACTTCCAAGAAGCATCTATAAGTTGAAGTCATTGAAAACTCTCATTTTGTCTGGATGTGCAAAAATTGACAAGTTGGAAGAGGACATAGAACAAATGGAATCTTTAACCACCCTGGTTGCAGATAAAACTGCTATAACAAGAGTGCCTTTTGCAATAGTAAGATCAAAAAGCATTGGATATATATCTTTGTGTGGCTATGAAGGATTCTCACGTAATGTGTTTCCTTCAATTATACGGTCTTGGATGTCTCCAACTAATAATATCTTATCTCGAGTTCAAACATCTTCTGCGGGCATGTCATCTCTTGATCTCTTAGATGAACAAAATAGCACTTTCTATGGTCTATCACTAAAAGATCTTCAGAAGCTTCAACGCCTTTGGGTGAAGTGTGACTCAGAAGTTCAACTAAATGAAAATAAAATGCCTCCCCTCGGATCTGGTTTACTCCCCAATGATAATTATCCTGATTGGTTAACCTTCAACAGTGAAGGTTCTTGTGTAACTTTCAAAGTCCCTCAAGTTGATCGGCGTAACTTGAAGACAATTATGTGTGCTGTCTATTTTTCTTCTCCTGACAATATCACATCAGAAGGCCTTCAAAATGTGTTGATGATAAATTCCACGAAGAACACCATTGTGCTCTATAAGAGAGAAGCATTATCCTCTTTTGATGAAGAGGAGTGGCAGAGAGTTGTATCAAATGTAGAACCCAGTGACAAAGTGAAGCTTGTTATTGTTTCTGGGAACGGATTCATTGTGAAGAAAACAACAATTTATCTAATATATGATGAAGATGAACCAATTGATGAAATGAAGGAGAACTGCCATGATCAGCCAGATAAGAATGTTACCGTTTCTGCTGGTGATAAAAATAGATATTGTAGACTCTTCCTTCTACTTCCTCCCCTTGTTCGAGCCGTTCTGATCTCGCGGCCTTTCTGGTTCGGTCTGGTTGGCCTTATGTTTTGGATTTGCTGCCGTTCAAACAAACGAAGAAGTTGTAACCTCATTTTAAGAGATGCAATAAGGTGGAAATGGCTAGTGGATTGCATTAACAAATTTATTGCTTACAAGAAGAGCAATAAAAGTGCAATTGAGAGCAGTAGCAGAGTTAAGCTGTTGGATTAA 4176 0.3779 NQDKDIKNVVEHVTRFLDKIDLFVADHPVGLESRVRDVIQLLKIGQSEDTREYGMLGKGGIGKTTLAKAVFNQIERDIEAKSILLNVREVWEQNNSEVSLEERLLSDIYKTNKIRIDATESGKNILMERLRKKRIFLVLDEVYTYDQLNALRQWIGEGSRILITTGAIDPLYALDNTYEMKAMDADESLELFSWHAFKQASPKQDFVELSKEVVHCAGGLPLALEVLGSHLFGREISEWESMLHELKRNPHRDLRQILKVCFDGLSDEVKMIFLDIAHFFIGMDRDHVIRVLNSSAQFAELGVNILVRKHLITIDENNKVGMHDELRHMGRAIMMEEPRTMPESRIFDVFLSFRGEDSRASFISHLCTSLQNAGIYVFMDDDEIQRGDQISVSLLQAIRRSRISIIILSQNYANSRWCMLELENIMESRRSMGLVVVPVFYGVDPSDVRQQTGKFGEGFKNLIKGISVDVTVRNWRIALLEVGGIAGVVVINSRNESNDIKKVVEQVTDLLDKTDLFVAEHPVGIEDRVQHVIQLMDNNQLLGISGMGGLGKSTIAKAVYNQIRRNFEAKSFLLNIREACEQNNGIVSLQQKLLSDIYKTTKIKIDTVESGKMELRKRLGQKTIFLVLDDVNEEEQLDALCGSRVWFSHKSRIIITTRDDDLLSKLEVDHIYKMKEMDESESTELFSWHTFKQPSPRESFADLSRDVVEYCEGLPLALQVIGSFLRNRGKRVWKSVLEKLKIIPHKKVQKKLRINFDGLSDDKVKEIFLDIAFFFIGMDRDEVIEILNDCGHFAEIGIDILVQQSLVTVDNKNKLGMHNLLRDMGREIIREKSPEEVEKRSRLWFYEDILKVLSTNTRTTNVQGLTLKSLSMNTTTYYLETEAFKKMDKLRLLQLAGVELGGDYKYLSRDLRWLCWHGFPLKYTPAEFHQGSLVAIELKYSNLERVWTKSQLLKKLKFLNLSHSPNLRQAPDFSNLPNLEKLILKDCTSLSLISHTIGQLNELLLINLKNCTSLRKLPRSIYKLKSLKTLILSGCAKIDKLEEDIEQMESLTTLVADKTAITRVPFAIVRSKSIGYISLCGYEGFSRNVFPSIIRSWMSPTNNILSRVQTSSAGMSSLDLLDEQNSTFYGLSLKDLQKLQRLWVKCDSEVQLNENKMPPLGSGLLPNDNYPDWLTFNSEGSCVTFKVPQVDRRNLKTIMCAVYFSSPDNITSEGLQNVLMINSTKNTIVLYKREALSSFDEEEWQRVVSNVEPSDKVKLVIVSGNGFIVKKTTIYLIYDEDEPIDEMKENCHDQPDKNVTVSAGDKNRYCRLFLLLPPLVRAVLISRPFWFGLVGLMFWICCRSNKRRSCNLILRDAIRWKWLVDCINKFIAYKKSNKSAIESSSRVKLLD. 1392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03467 1391 SUPERFAMILY "Winged helix" DNA-binding domain 254 339 IPR036390 -
Seca12g03467 1391 SUPERFAMILY "Winged helix" DNA-binding domain 747 853 IPR036390 -
Seca12g03467 1391 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 19 276 IPR027417 -
Seca12g03467 1391 SUPERFAMILY L domain-like 875 1152 - -
Seca12g03467 1391 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 348 1143 IPR044974 GO:0006952
Seca12g03467 1391 PRINTS Disease resistance protein signature 1022 1038 - -
Seca12g03467 1391 PRINTS Disease resistance protein signature 541 556 - -
Seca12g03467 1391 PRINTS Disease resistance protein signature 711 725 - -
Seca12g03467 1391 PRINTS Disease resistance protein signature 618 632 - -
Seca12g03467 1391 Gene3D - 315 481 IPR035897 -
Seca12g03467 1391 Gene3D - 18 172 IPR027417 -
Seca12g03467 1391 SMART till_3 346 485 IPR000157 GO:0007165
Seca12g03467 1391 Pfam NB-ARC domain 33 256 IPR002182 GO:0043531
Seca12g03467 1391 Pfam NB-ARC domain 528 746 IPR002182 GO:0043531
Seca12g03467 1391 Gene3D Ribonuclease Inhibitor 846 1174 IPR032675 -
Seca12g03467 1391 FunFam Disease resistance protein (TIR-NBS-LRR class) 343 513 - -
Seca12g03467 1391 Gene3D - 676 760 IPR042197 -
Seca12g03467 1391 Gene3D - 182 266 IPR042197 -
Seca12g03467 1391 SMART AAA_5 49 184 IPR003593 GO:0016887
Seca12g03467 1391 SMART AAA_5 538 681 IPR003593 GO:0016887
Seca12g03467 1391 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 509 771 IPR027417 -
Seca12g03467 1391 SUPERFAMILY Toll/Interleukin receptor TIR domain 339 487 IPR035897 -
Seca12g03467 1391 FunFam Disease resistance protein (TIR-NBS-LRR class) 184 266 - -
Seca12g03467 1391 Gene3D - 502 671 IPR027417 -
Seca12g03467 1391 Pfam TIR domain 347 508 IPR000157 GO:0007165
Seca12g03467 1391 ProSiteProfiles TIR domain profile. 345 511 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03467 Seca-Chr12 77758116 77769840 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03467 3 345 WRKY Transcription Factor Family AT4G12020 30.286 1.24e-29 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03467 - - tpra:123891787 1474.14