Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03464 ATGTCCCCGATTCAAGAGCCCGACGACCACGACACCATCTCCGACCACCACCGCCAGAAGAAGTGCTCCACCGCCGCAAACAAGAGAACCTCGCGAGAAACCGGCGGCTCGGGCAGCGGCACGATGAGGTACCGCGGGGTCAGACGCCGTCCCTGGGGACGTTACGCGGCCGAGATAAGGGACCCACAGTCAAAGGAACGCCGCTGGCTCGGCACCTTCGACACGGCGGAGGAAGCCGCCTGCGCCTACGACTGCGCCGCCCGTGCCATGCGTGGAGCCAAAGCGCGAACCAATTTCGTCTACCCTGATTCCACTGAACAACACCTCTTCCACCCTTTCAACATTCCCAAACAATCCCAACAATTCAACAAGTTCATCCAGAATCGTCACTTGAATGCTTCACTTAACAGTGGTGATGACGTGTCTGCATCACCGACACAGCCTAATAACCCTTCGCTCAACATGCTTCTGTTTCGTGACTACCTTAACTCTTCCTCAAACCCCTTTTTAGTTCCTTCTTCTTCTTCTTCTCAACATTTTCACCACAATGGGAATAGCTCTTCAATCCCTTCATTATTACAAGCTTCCACGTGTCCCCAAGGTTGCTGTTTGGTGAATTCTTCTGCTGGCAACACTGATATGCATAACGGTTCCAGTGGAAAGGAAGAAGTCACTGGAGCAATTGATGAAGAGTCTGATTTTTTTCCAATAGAACCTTCAGACTCTGGATTGTTGGAAGAGATAGTAAACAAGTTCATGACGAATTCAAAGTCAAAGTCAAAGACTGTGCCAAAGAATTGCGAGAAGACGCTGAAGACTGAGACCAATTTTTCCATTATTCCTGAGTCAATTCCTCAACCAATCTCTGATCAGAGGGTTGTTTCTGCCACTCGGTGCTATGAAGATGCGAGGATGAGGCTTCCTATGATCGAGGGTTTTGATTACCCAAGTCACCCCATGCAGCAATTTGAGACTACTCTTAATGGGTTTAACTTTAACAACACGCAGGCTATGACTTTTGGGGGTGAACAGTTTATGATGAATCATCCAGAGTGCTCTATTATTATGGAAGATATTTTTCAGTATCCAGAACTTTTTAATTCTTTTGCAGCCAGGATGCAAAATGCTTAA 1131 0.4792 MSPIQEPDDHDTISDHHRQKKCSTAANKRTSRETGGSGSGTMRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAACAYDCAARAMRGAKARTNFVYPDSTEQHLFHPFNIPKQSQQFNKFIQNRHLNASLNSGDDVSASPTQPNNPSLNMLLFRDYLNSSSNPFLVPSSSSSQHFHHNGNSSSIPSLLQASTCPQGCCLVNSSAGNTDMHNGSSGKEEVTGAIDEESDFFPIEPSDSGLLEEIVNKFMTNSKSKSKTVPKNCEKTLKTETNFSIIPESIPQPISDQRVVSATRCYEDARMRLPMIEGFDYPSHPMQQFETTLNGFNFNNTQAMTFGGEQFMMNHPECSIIMEDIFQYPELFNSFAARMQNA. 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03464 376 SMART rav1_2 43 106 IPR001471 GO:0003700|GO:0006355
Seca12g03464 376 PRINTS Ethylene responsive element binding protein signature 44 55 IPR001471 GO:0003700|GO:0006355
Seca12g03464 376 PRINTS Ethylene responsive element binding protein signature 66 82 IPR001471 GO:0003700|GO:0006355
Seca12g03464 376 Pfam AP2 domain 43 92 IPR001471 GO:0003700|GO:0006355
Seca12g03464 376 CDD AP2 43 99 IPR001471 GO:0003700|GO:0006355
Seca12g03464 376 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 26 217 - -
Seca12g03464 376 ProSiteProfiles AP2/ERF domain profile. 43 100 IPR001471 GO:0003700|GO:0006355
Seca12g03464 376 MobiDBLite consensus disorder prediction 1 46 - -
Seca12g03464 376 FunFam Ethylene-responsive transcription factor 2 42 101 - -
Seca12g03464 376 SUPERFAMILY DNA-binding domain 43 100 IPR016177 GO:0003677
Seca12g03464 376 Gene3D AP2/ERF domain 42 101 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03464 Seca-Chr12 77261821 77262951 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03464 41 283 AP2-EREBP Transcription Factor Family AT1G24590 40.400 2.46e-42 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Seca12g03464 AP2 5.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03464 - - aprc:113860142 345.895