Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03459 ATGGAGATTGGAAATCTTAATCAAATTAACTTTATTGTATTGGGAAATAATAGGTTGAATGGATCTATTCCTTCAGAACTCTTCAACATTTCAACTTTGGAATTCTTGTATCTTGCAAGGAATTCTTTCTCAGGTGTTCTTCCATCAGATATGGGATATGGTCTTCCTCACTTGAAAGAACTGTATGTGTTTGCAAACAAACTTTTTGGAAACATTCCAAATGGTATATCTAATGCTTCTGAGCTCACTGCAATCGATTTTAGTGACAATCAATTTAGTGGTATTATACCCAATGCATTTGGAGATTTAACAAACCTCGAATGGCTTGGTTTAGCAGTGAATAATTTGACGACAGATGACCCTACTGAATTCAAACTCCTTACTTCATTGACAAGTTGCAGATACTTGACATATCTGGCTATTTCAAAAAATAGTTTCCAGACAAAACTTCCCAGATCTATTGGAAACTTATCCATGTCTCTAGAAAACTTTTTAGCAGCTTCCTGTGGAATTAATGGTGTTATTCCACTTGAAATTGGTAACATAAGTAACTTGATATACTTGTCTTTGGGTGGGAATGATTTAACTGGGCCAATGCCTAGTACAATCAAAAGGTTACAAAATCTTCAGTATTTGGATCTTGGCTACAATGGACTACAAGGATCCATTGTTAATGAGCTTTGTGAAATTAGGAGTTTGAGTGAGCTCAATCTAACAAATAATAACCTTTCAAGAGAGTTGCCAACATGCATAGGAAATATGACTTCTCTTCGAAAGGTTTACATAGGGTCTAATAGATTGACTGGGATACCTTCTTCTTTTTGGGGTCTTAGAGATATCTTGGAGCTAGACTTATCCTCCAATGCTTTAATTGGAAATTTACCACTTGATGTAGGGCAGTTGAGAGCTGTTGTATTACTGAATCTATCAAGAAATGAGATTTCAAGCAACATTCCTACAACCATTGGTTCCTTGAAAACTTTGCAAACCCTTTCCTTGGCACATAACAAATTTCAAGGGTCTATTCCTACATCAATTGGCGAAATGGCAAGCTTGAGTTTCTTAGACTTATCCCAAAATCTTTTGACTGGTGTGATTCCAAAATCCTTAGAGTCACTTGCTTATCTTCAATACATTAACTTTTCATACAATAGATTACAAGGAGAGATTCCTGATGGTGGACCTTTCATAAATTTCACAGCTTCATCATTCATGCATAATGAAGCACTTTGTGGCGATCCACGTCTACAGGTACCTCCATGTGATAAACAAGATAGGCGAAGATCAATTGCAAAGATGCTTTTACTCAAATGCATGTTGCCTATAATTGTGTCAATCATTTTGGTTGTTGCTTGCATAATACTTCTACAACATAAAAGGAAAAAGATTGAAAATCCACTTGAAAAGGATTTATCAACTTTAGGAGTTCCAAGAAGGATTTCTTATTATGAACTTGTACGAGCAACTAATGGATTCAATGAGAGCAATTTAGTTGGAAGGGGGAGCTTTGGTTCTGTGTATCAAGGGATTCTCTCTAGTGGGATGATGGTTGCAATTAAAGTATTTGATTTGAACTTGGAAGCAACATCAAGGAGCTTTGATGTAGAATGCAATGCAATGCGTAATCTACGACATCGAAATCTTGTTAAGATTATAAGTAGTTGTTCAAATGTTGATTTCAAATCTTTGGTAATGGAATTCATGTCAAATGGAAGTGTGGAAAAATGGTTATACTCAGGCAACTATTTTCTAGACTTCTTGCAACGGTTGAATATAATGATAGATGTGGCATCTGCATTGGAATATCTCCATCACGATTCTTCAATACCAATTGTTCATTGTGATCTGAAACCTAGTAATGTTTTACTGGATGAAAACATGGTTGCACATGTAAGTGATTTTGGCATTGCAAAGCTTTTGGATGAAGGACAGTCTAAATCTCATACTGAGACTTTGGCTACTCTTGGCTACGTTGCACCAGGTCACTTCTTCTTTTCTACCACTTTTAGTTTTCATTTTTTTATATTTTCAGTCTTGACATTATATCTATGTTATAATATTATTATATAA 2070 0.3527 MEIGNLNQINFIVLGNNRLNGSIPSELFNISTLEFLYLARNSFSGVLPSDMGYGLPHLKELYVFANKLFGNIPNGISNASELTAIDFSDNQFSGIIPNAFGDLTNLEWLGLAVNNLTTDDPTEFKLLTSLTSCRYLTYLAISKNSFQTKLPRSIGNLSMSLENFLAASCGINGVIPLEIGNISNLIYLSLGGNDLTGPMPSTIKRLQNLQYLDLGYNGLQGSIVNELCEIRSLSELNLTNNNLSRELPTCIGNMTSLRKVYIGSNRLTGIPSSFWGLRDILELDLSSNALIGNLPLDVGQLRAVVLLNLSRNEISSNIPTTIGSLKTLQTLSLAHNKFQGSIPTSIGEMASLSFLDLSQNLLTGVIPKSLESLAYLQYINFSYNRLQGEIPDGGPFINFTASSFMHNEALCGDPRLQVPPCDKQDRRRSIAKMLLLKCMLPIIVSIILVVACIILLQHKRKKIENPLEKDLSTLGVPRRISYYELVRATNGFNESNLVGRGSFGSVYQGILSSGMMVAIKVFDLNLEATSRSFDVECNAMRNLRHRNLVKIISSCSNVDFKSLVMEFMSNGSVEKWLYSGNYFLDFLQRLNIMIDVASALEYLHHDSSIPIVHCDLKPSNVLLDENMVAHVSDFGIAKLLDEGQSKSHTETLATLGYVAPGHFFFSTTFSFHFFIFSVLTLYLCYNIII. 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03459 689 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 129 425 - -
Seca12g03459 689 Gene3D Ribonuclease Inhibitor 1 129 IPR032675 -
Seca12g03459 689 FunFam Os07g0541700 protein 568 655 - -
Seca12g03459 689 SUPERFAMILY RNI-like 36 391 - -
Seca12g03459 689 ProSitePatterns Serine/Threonine protein kinases active-site signature. 611 623 IPR008271 GO:0004672|GO:0006468
Seca12g03459 689 Pfam Protein kinase domain 493 660 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g03459 689 SUPERFAMILY Protein kinase-like (PK-like) 472 666 IPR011009 -
Seca12g03459 689 SMART LRR_typ_2 254 276 IPR003591 -
Seca12g03459 689 SMART LRR_typ_2 301 325 IPR003591 -
Seca12g03459 689 SMART LRR_typ_2 103 126 IPR003591 -
Seca12g03459 689 SMART LRR_typ_2 55 79 IPR003591 -
Seca12g03459 689 SMART LRR_typ_2 349 372 IPR003591 -
Seca12g03459 689 SMART LRR_typ_2 230 253 IPR003591 -
Seca12g03459 689 Pfam Leucine Rich repeat 207 226 IPR001611 GO:0005515
Seca12g03459 689 Gene3D Transferase(Phosphotransferase) domain 1 568 677 - -
Seca12g03459 689 Gene3D Ribonuclease Inhibitor 130 429 IPR032675 -
Seca12g03459 689 FunFam Serine-threonine protein kinase plant-type 473 567 - -
Seca12g03459 689 SMART serkin_6 492 689 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g03459 689 ProSiteProfiles Protein kinase domain profile. 492 689 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g03459 689 Pfam Leucine rich repeat 327 386 IPR001611 GO:0005515
Seca12g03459 689 Pfam Leucine rich repeat 81 131 IPR001611 GO:0005515
Seca12g03459 689 Pfam Leucine rich repeat 231 290 IPR001611 GO:0005515
Seca12g03459 689 PANTHER OS04G0122200 PROTEIN 4 662 - -
Seca12g03459 689 Gene3D Phosphorylase Kinase; domain 1 475 567 - -
Seca12g03459 689 ProSitePatterns Protein kinases ATP-binding region signature. 498 520 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03459 Seca-Chr12 76669949 76674253 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03459 2 660 Receptor kinase-like Gene Family AT3G47570 38.986 2.40e-141 437
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Seca12g03459 Pkinase 1.8e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03459 - K13420 mtr:25485995 889.026