Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03448 ATGGTGAAATCAAAGAAATTCAGAGGTGTCAGGCAACGTCATTGGGGCTCGTGGGTTTCTGAGATTCGCCATCCATTATTGAAAAGGAGGGTGTGGCTTGGGACATTTGAGACAGCTGAAGAAGCAGCAAGAGCATATGATAAAGCAGCCATTTTGATGAGTGGAAGGAATGCCAAAACAAACTTCCCAGTTGCTGATCACAACCCAATGGGGAATCACAGTTGTGCCTCTTCTTCAACAACATTGTCTGCAGTTCTGAGTGCAAAGCTAAGGAAGTGTTGCAAGTCCCCTTCACCTTCCCTCACTTGCCTAAGGCTTGACACTGAGAATTCTCACTTTGGGGTGTGGCAGAAGAGAGCAGGACCCCGTTCTGACTCAAACTGGATCATGATGGTTGAGTTGGAAAGGAAGAAAGAGGAAACTTGTGATGATTCATCAAAATTGCCTGATGCCCCTAATGATGATGACAAGGTAAAATCAGAGGAAGTCAATGCCAATGTCAATGTCAATGGTTTGGATGATGAACAAAGGATTGCTCTTCAGATGATTGAGGAACTTCTAAATAGGAATTGA 573 0.4415 MVKSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDKAAILMSGRNAKTNFPVADHNPMGNHSCASSSTTLSAVLSAKLRKCCKSPSPSLTCLRLDTENSHFGVWQKRAGPRSDSNWIMMVELERKKEETCDDSSKLPDAPNDDDKVKSEEVNANVNVNGLDDEQRIALQMIEELLNRN. 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03448 190 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
Seca12g03448 190 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Seca12g03448 190 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Seca12g03448 190 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Seca12g03448 190 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 149 - -
Seca12g03448 190 MobiDBLite consensus disorder prediction 140 162 - -
Seca12g03448 190 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Seca12g03448 190 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Seca12g03448 190 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Seca12g03448 190 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Seca12g03448 190 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03448 Seca-Chr12 76197682 76198596 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03448 1 190 AP2-EREBP Transcription Factor Family AT1G15360 60.577 2.75e-76 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca12g03448 AP2 2.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03448 - - gmx:100796962 278.1