Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03426 ATGGAATCTGTGAACGATATTGTTAAGGTTGACATGAAAAATCTTAGCCCACACAATATAATGAGGTATGATTTCATCAGCCGTGATATTGTATACAAGTTTTACAAAGCTTATGCAAAGGTTCACGGCTTTGCTCCAAGAAGAGGATGCACTGCAAAGAATAAAAGGGGTGAAGTTATCCAACAAACATTCTTGTGTAATAAAGAAGGGGTAAAAAGAAAAAGATATGAAAGCATTGAGGAATGTCAACGAGAACCTAGGCCAGAGACTAGATGTCGATGTTATGCACAATTGCGGGTCCATGTAGATGTTACTTCAGGGTTGTGGTATGAAACTATGTTTGATGTTGCACATAATCATGACATGCATGATGAATTATTCACTAGGATGCTTGCAGCCCATAGAGAAATGGGTGAGGCTGATGTTCTTGAGATGAATGCAATGAGAAGTGCGGGCATTGGACCAAGTGACATATATGGGTTATTTGCCACTCAATCAGGGGGCTATGAGAAGATAGGGTATCGAAAGAAAGACTTATAA 540 0.3926 MESVNDIVKVDMKNLSPHNIMRYDFISRDIVYKFYKAYAKVHGFAPRRGCTAKNKRGEVIQQTFLCNKEGVKRKRYESIEECQREPRPETRCRCYAQLRVHVDVTSGLWYETMFDVAHNHDMHDELFTRMLAAHREMGEADVLEMNAMRSAGIGPSDIYGLFATQSGGYEKIGYRKKDL. 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03426 179 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 21 171 - -
Seca12g03426 179 Pfam FAR1 DNA-binding domain 33 122 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03426 Seca-Chr12 74138479 74139018 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca12g03426 FAR1 1.2e-16 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03426 - - mtr:112417123 181.415